BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0958800 Os01g0958800|AK059634
         (201 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11620.2  | chr3:3669551-3671734 REVERSE LENGTH=313            242   8e-65

>AT3G11620.2 | chr3:3669551-3671734 REVERSE LENGTH=313
          Length = 312

 Score =  242 bits (618), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 112/195 (57%), Positives = 144/195 (73%)

Query: 7   LVLVGHSIGAYICLEIFKRLQKKVKLCVGLYPFLTLNKKSMKQSAIGYIARSSLLSKGVS 66
           ++LVGHSIG+YI LE+ K+   KV  C+GLYPFLTLN++S KQS IG +A SS+LS   S
Sbjct: 114 IILVGHSIGSYISLELLKKFSDKVVYCIGLYPFLTLNQQSTKQSLIGKLAASSVLSATAS 173

Query: 67  SFVSFIGSLQASVTRGIMRRLLGPSWSVTAVEATCGHLLWYHTMRNVLFMAMTEFTKLSE 126
             ++ +  L  S  R ++ + +G SWS TAV+ATC HL  YHTMRNVLFMA +EF +L+ 
Sbjct: 174 FLIASLRLLPMSAARLLVSKSIGASWSDTAVQATCTHLRQYHTMRNVLFMAKSEFRELAA 233

Query: 127 EPDWNFISAKQDQIAFLFDVDDHWGPLAHLEEISKRAPGVALSVETEGHTHGYCCTEAGS 186
           EPDW+F+   Q ++AFLF +DDHWGPL   EEISK+AP  +LS+E EGHTHG+CCT AGS
Sbjct: 234 EPDWDFMRENQSKLAFLFGIDDHWGPLQLFEEISKQAPHTSLSIEREGHTHGFCCTVAGS 293

Query: 187 FWAADYVANLIKTKF 201
            W A +VA LIK +F
Sbjct: 294 AWVAQHVATLIKNRF 308



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,921,079
Number of extensions: 137604
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)