BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0954500 Os01g0954500|AK102444
(340 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12330.4 | chr5:3987677-3989408 REVERSE LENGTH=408 197 9e-51
AT5G66350.1 | chr5:26504714-26506143 REVERSE LENGTH=332 151 6e-37
AT3G51060.1 | chr3:18964606-18966130 FORWARD LENGTH=371 149 2e-36
AT1G19790.1 | chr1:6838400-6839831 REVERSE LENGTH=346 147 7e-36
AT1G75520.1 | chr1:28351779-28353179 REVERSE LENGTH=347 145 2e-35
AT4G36260.1 | chr4:17155705-17157006 REVERSE LENGTH=323 137 8e-33
AT3G54430.1 | chr3:20147224-20147851 REVERSE LENGTH=184 126 1e-29
AT2G18120.1 | chr2:7876722-7877681 REVERSE LENGTH=223 125 3e-29
AT2G21400.1 | chr2:9158390-9159541 FORWARD LENGTH=175 122 3e-28
AT5G33210.1 | chr5:12465057-12465713 REVERSE LENGTH=174 94 7e-20
>AT5G12330.4 | chr5:3987677-3989408 REVERSE LENGTH=408
Length = 407
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 125/196 (63%), Gaps = 19/196 (9%)
Query: 115 CQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQL-TGXXXXXXXXX 173
CQDCGNQAKK+C +RCRTCCKSRGFDCSTHVKSTWV AARRRERQ + TG
Sbjct: 199 CQDCGNQAKKECKQRRCRTCCKSRGFDCSTHVKSTWVSAARRRERQVMPTGANPTAGSSL 258
Query: 174 XXXXXXKKPRLLXX----XXXXXXXXXXXXXXPRSFDTTSSHQD-ASFRESLPRQVRAPA 228
KKPR++ P+SF+T+SS QD RE+ P QVRA A
Sbjct: 259 STSSGTKKPRIVGSQQQQQQQATSHTSTSNTPPQSFETSSSRQDGGGSREAWPGQVRAAA 318
Query: 229 VFRCVRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDDGRGLAATSNDDSTAGGVPN 288
VF+CVRVT+++DG+DEYAYQA V I GHVFKGFLYDQG++ G P+
Sbjct: 319 VFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGF-------------PS 365
Query: 289 ISELHLGGASISGNAM 304
+S+LHLGG++ + N +
Sbjct: 366 MSDLHLGGSANNHNGV 381
>AT5G66350.1 | chr5:26504714-26506143 REVERSE LENGTH=332
Length = 331
Score = 151 bits (381), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 91/152 (59%), Gaps = 11/152 (7%)
Query: 115 CQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGXXXXXXXXXX 174
CQDCGNQ+KKDC H RCRTCCKSRG DC THVKSTWVPAA+RRERQQ
Sbjct: 120 CQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLGG 179
Query: 175 XXXXXKKPRLLXXXXXXXXXXXXXXXXPRSFDTTSSHQDASFRESLPRQVRAPAVFRCVR 234
++ R+ + TS + +F P +V + AVFRCVR
Sbjct: 180 SVPKRQRERIPARSTSMAYTRIPS-------NNTSGLEVGNF----PPEVSSSAVFRCVR 228
Query: 235 VTSIDDGEDEYAYQATVTINGHVFKGFLYDQG 266
V+S+DD E+EYAY+ V+I GHVFKG LYDQG
Sbjct: 229 VSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQG 260
>AT3G51060.1 | chr3:18964606-18966130 FORWARD LENGTH=371
Length = 370
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 91/152 (59%), Gaps = 11/152 (7%)
Query: 113 ATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGXXXXXXXX 172
+CQDCGNQAKKDC H RCRTCCKSRGF+CSTHV+STWVPAA+RRERQQ
Sbjct: 142 VSCQDCGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPAAKRRERQQQLATVQPQTQL 201
Query: 173 XXXXXXXKKPRLLXXXXXXXXXXXXXXXXPRSFDTTSSHQDASFRESLPRQVRAPAVFRC 232
K+ R + S + +F P +V + AVFRC
Sbjct: 202 PRGESVPKRHR-------ENLPATSSSLVCTRIPSHSGLEVGNF----PAEVSSSAVFRC 250
Query: 233 VRVTSIDDGEDEYAYQATVTINGHVFKGFLYD 264
VRV+S++DGE+E+AYQ V+I GH+FKG LYD
Sbjct: 251 VRVSSVEDGEEEFAYQTAVSIGGHIFKGILYD 282
>AT1G19790.1 | chr1:6838400-6839831 REVERSE LENGTH=346
Length = 345
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 89/154 (57%), Gaps = 5/154 (3%)
Query: 115 CQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGX--XXXXXXX 172
CQDCGNQAKKDC H RCRTCCKSRGFDC THVKSTWV AA+RRERQ
Sbjct: 119 CQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDA 178
Query: 173 XXXXXXXKKPRLLXXXXXXXXXXXXXXXXPRSFDTTSSHQDASFRESLPRQVRAPAVFRC 232
R + +SS + S LP ++ +PAVFRC
Sbjct: 179 NSRGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSH---LPPEISSPAVFRC 235
Query: 233 VRVTSIDDGEDEYAYQATVTINGHVFKGFLYDQG 266
+RV+SIDD ++EYAYQ V+I GHVFKG LYDQG
Sbjct: 236 MRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQG 269
>AT1G75520.1 | chr1:28351779-28353179 REVERSE LENGTH=347
Length = 346
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 89/159 (55%), Gaps = 6/159 (3%)
Query: 114 TCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGXXXXXXXXX 173
CQDCGNQAKKDC H RCRTCCKSRGF C THVKSTWVPAA+RRER
Sbjct: 124 NCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASS 183
Query: 174 XXXXXXKKPRLLXXXXXXXXXXXXXXXXPRSFDT----TSSHQDASFRESLPRQVRAPAV 229
K+ R +T +S+ + LP +V +PA+
Sbjct: 184 RETQNAKRLREASGGDNNDDKDHSGGGGSALANTRVVNANSNSGLEVSQHLPPEVNSPAI 243
Query: 230 FRCVRVTSIDDGEDE--YAYQATVTINGHVFKGFLYDQG 266
FRCVRV+SI++ ED+ YAYQ V I GH+FKG LYDQG
Sbjct: 244 FRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQG 282
>AT4G36260.1 | chr4:17155705-17157006 REVERSE LENGTH=323
Length = 322
Score = 137 bits (345), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 107/208 (51%), Gaps = 12/208 (5%)
Query: 63 SAIQFWQPPPQLPSSAAGGNPNPSS-SAFPYLKKPLPMLDTXXXXXXXXXAATCQDCGNQ 121
S+ Q WQ PP+ +P S +P + + L T +C+DCGNQ
Sbjct: 45 SSQQVWQIPPEQMLMHHHSHPQQQSLDLYPGHQIDVSDLATSSRSI----TISCRDCGNQ 100
Query: 122 AKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGXXXXXXXXXXXXXXXKK 181
AKKDC H RCRTCCKSRGFDCSTHV+STW+P ARRRERQQ
Sbjct: 101 AKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGSGGAGG 160
Query: 182 PRLLXXXXXXXXXXXXXXXXPRSFDTTSSHQ--DASFRESLPRQVRAPAVFRCVRVTSID 239
R ++ + +ASF P +V + A+FRCV+++ +D
Sbjct: 161 GGSSIPKRHRDPTLPGTSSSSRLPSHSAGLEMGEASF----PGEVSSDALFRCVKMSGVD 216
Query: 240 DGED-EYAYQATVTINGHVFKGFLYDQG 266
DG D +YAYQ TV I GH+FKG LYDQG
Sbjct: 217 DGGDGQYAYQTTVNIGGHLFKGILYDQG 244
>AT3G54430.1 | chr3:20147224-20147851 REVERSE LENGTH=184
Length = 183
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 90/165 (54%), Gaps = 24/165 (14%)
Query: 114 TCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGXXXXXXXXX 173
C+DCGN+AKK+C +RCRTCCKSRG++C THVKSTW+P++
Sbjct: 40 VCRDCGNRAKKECLFERCRTCCKSRGYNCVTHVKSTWIPSS---------------ATRS 84
Query: 174 XXXXXXKKPRLLXXXXXXXXXXXXXXXXPRSFDTTSSHQDASFRESLPRQVRAPAVFRCV 233
+K +L TT+S Q+ FRE LP ++ APAVF+
Sbjct: 85 SSSPSERKKKLKIDKQSSPNVSL--------LPTTTSRQERGFREGLPGKIEAPAVFKRT 136
Query: 234 RVTSIDDGED-EYAYQATVTINGHVFKGFLYDQGVDDGRGLAATS 277
RVT+I + E E YQATVTI+GH+FKGFL+ GVD + S
Sbjct: 137 RVTAISNNEQAEIGYQATVTISGHIFKGFLHYYGVDHNKAFPCLS 181
>AT2G18120.1 | chr2:7876722-7877681 REVERSE LENGTH=223
Length = 222
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 85/156 (54%), Gaps = 19/156 (12%)
Query: 114 TCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGXXXXXXXXX 173
+CQ+CGNQAKK C H RCRTCCKS G C THV+STW+P A+RRERQQ
Sbjct: 71 SCQECGNQAKKGCTHGRCRTCCKSNGLHCPTHVRSTWIPIAKRRERQQ------------ 118
Query: 174 XXXXXXKKPRLLXXXXXXXXXXXXXXXXPRSFDTTSSHQDASFRESLPRQVRAPAVFRCV 233
+ P + D++ + P +V + A+FRCV
Sbjct: 119 ----QLQTPTSNPTGGSGRVGKYRDINQHATLDSSGLEMGET---RFPDEVSSDALFRCV 171
Query: 234 RVTSIDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 269
R++ DDGE +YAYQ TV I GH+FKG LY+QG ++
Sbjct: 172 RMSGTDDGEGQYAYQTTVGIAGHLFKGILYNQGPEN 207
>AT2G21400.1 | chr2:9158390-9159541 FORWARD LENGTH=175
Length = 174
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 80/153 (52%), Gaps = 37/153 (24%)
Query: 115 CQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTGXXXXXXXXXX 174
C+DCGNQAKKDC + RCRTCCKS+ F C TH+KSTWVPA RR +
Sbjct: 9 CEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHKH------------- 55
Query: 175 XXXXXKKPRLLXXXXXXXXXXXXXXXXPRSFDTTSSHQDASFRESLPRQVRAPAVFRCVR 234
P S Q + P ++ + A FRCV+
Sbjct: 56 ------------------------QSQPLSTSIPKGVQIHTTPGHFPAELSSLADFRCVK 91
Query: 235 VTSIDDGEDEYAYQATVTINGHVFKGFLYDQGV 267
V+SIDDG+++YAYQ TV I GHVF+G L+DQG+
Sbjct: 92 VSSIDDGKEQYAYQTTVNIGGHVFRGILHDQGL 124
>AT5G33210.1 | chr5:12465057-12465713 REVERSE LENGTH=174
Length = 173
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 44/49 (89%)
Query: 113 ATCQDCGNQAKKDCGHQRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQ 161
+CQD GNQAKKDC H RCRTCCKSRGF+CSTHV+STWVPA +RRERQQ
Sbjct: 50 VSCQDFGNQAKKDCSHMRCRTCCKSRGFECSTHVRSTWVPATKRRERQQ 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,960,755
Number of extensions: 235795
Number of successful extensions: 838
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 832
Number of HSP's successfully gapped: 18
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)