BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0952600 Os01g0952600|AK070047
(1117 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G54440.3 | chr3:20148494-20157019 REVERSE LENGTH=1121 1490 0.0
>AT3G54440.3 | chr3:20148494-20157019 REVERSE LENGTH=1121
Length = 1120
Score = 1490 bits (3857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/1132 (62%), Positives = 870/1132 (76%), Gaps = 30/1132 (2%)
Query: 3 VASASALFSAKNLPHKPWEDPSFFRWRKREAHVPLRSHDTPE-------------GALKY 49
V+ A+ + ++ WED + F+WRKR+ HV LR H++ + GAL+Y
Sbjct: 2 VSLATQMILPSENGYRVWEDQTLFKWRKRDPHVTLRCHESVQVSQGRVKILCDCIGALRY 61
Query: 50 WHERRNVNYLNSDSAVWNDDAVRGALESAAFWSKGLPYVQTLSGYWKFLLASSPESVPEK 109
W++R NV+ S SAVWNDDAV+ AL+SAAFW GLP+V++LSGYWKF LA P +VP+K
Sbjct: 62 WYQRNNVDLTVSKSAVWNDDAVQAALDSAAFWVDGLPFVKSLSGYWKFFLAPKPANVPDK 121
Query: 110 FYDAYFNDSDWEALPVPSNWQMHGFDRPIYTNVTYPFTMNPPFVPNDNPTGCYRTVFRIP 169
FYDA F+DSDW AL VPSNWQ HGFDRPIYTNV YPF +PP+VP DNPTGCYRT F+IP
Sbjct: 122 FYDAAFSDSDWNALQVPSNWQCHGFDRPIYTNVVYPFPNDPPYVPEDNPTGCYRTYFQIP 181
Query: 170 KEWKGRRILLHFEAVDSAFFAWVNGVPVGYSQDSRLPAEFEITDFCHPCDSEKENVLAVQ 229
KEWK RRILLHFEAVDSAFFAW+NG PVGYSQDSRLPAEFEI+D+C+P DS K+NVLAVQ
Sbjct: 182 KEWKDRRILLHFEAVDSAFFAWINGNPVGYSQDSRLPAEFEISDYCYPWDSGKQNVLAVQ 241
Query: 230 VMRWSDGSYLEDQDHWWLSGIHRDVLLVSKPQIFITDYFFKATLDEGFRVADIEVEVEID 289
V RWSDGSYLEDQDHWWLSGIHRDVLL++KP++FI DYFFK+ L + F ADI+VEV+ID
Sbjct: 242 VFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPKVFIADYFFKSKLADDFSYADIQVEVKID 301
Query: 290 SQKQDREHV--STLSIEATLYD--NYGPADVLTSDMSAASVANLKLKPASRPKHCYGFHG 345
+ ++ + + S IEA ++D N+ ++ + ++S VANLKL P+ P GFHG
Sbjct: 302 NMQESSKDLVLSNFIIEAAIFDTKNWYNSEGFSCELSP-KVANLKLNPSPSP--TLGFHG 358
Query: 346 YVLGGKVENPKLWSSEHPNLYTLVVVLKDSNGKLIECESCQVGIRNVVLAHKQMLVNGCP 405
Y+L GK+++P LWS+E PN+Y LV+ LKD++GK+++ ES VGIR V A KQ+LVNG P
Sbjct: 359 YLLEGKLDSPNLWSAEQPNVYILVLTLKDTSGKVLDSESSIVGIRQVSKAFKQLLVNGHP 418
Query: 406 VVIRGVNRHEHHPRVGKTNLEACMIKDLVLMRQNNINAVRNSHYPQHPRWYELCDIFGLY 465
VVI+GVNRHEHHPRVGKTN+EACM+KDL++M++ NINAVRNSHYPQHPRWYELCD+FG+Y
Sbjct: 419 VVIKGVNRHEHHPRVGKTNIEACMVKDLIMMKEYNINAVRNSHYPQHPRWYELCDLFGMY 478
Query: 466 VIDEANIETHGFDESSHFKHPTLEPFWASAMLDRVVGMVERDKNHACIIVWSLGNESSYG 525
+IDEANIETHGFD S H KHP EP WA+AMLDRVVGMVERDKNH CII WSLGNE+ YG
Sbjct: 479 MIDEANIETHGFDLSGHLKHPAKEPSWAAAMLDRVVGMVERDKNHTCIISWSLGNEAGYG 538
Query: 526 PNHSAMSGWIRGKDPTRPIHYEGGGSRTSSTDIVCPMYMRVWDILKIAQDPSENRPLILC 585
PNHSAM+GWIR KDP+R +HYEGGGSRTSSTDIVCPMYMRVWDI+KIA D +E+RPLILC
Sbjct: 539 PNHSAMAGWIREKDPSRLVHYEGGGSRTSSTDIVCPMYMRVWDIIKIALDQNESRPLILC 598
Query: 586 EYSHAMGNSNGNIDAYWMAIDNTVGLQGGFIWDWVDQGLLKEDADGSKNWAYGGDFGDTP 645
EY HAMGNSNGNID YW AIDNT GLQGGFIWDWVDQGLLK +DG K WAYGGDFGD P
Sbjct: 599 EYQHAMGNSNGNIDEYWEAIDNTFGLQGGFIWDWVDQGLLKLGSDGIKRWAYGGDFGDQP 658
Query: 646 NDLNFCLNGIVWPDRTIHPAVHEVKYLYQPIKITMMDNMLKIENVHFFETTEALDFSWLL 705
NDLNFCLNG++WPDRT HPA+HEVK+ YQPIK+++ D M+K+ N +FF TTE L+FSW +
Sbjct: 659 NDLNFCLNGLIWPDRTPHPALHEVKHCYQPIKVSLTDGMIKVANTYFFNTTEELEFSWTI 718
Query: 706 QGDGCALGSGSLNVPSIAPQSTHLINMKSSPWFTIWSTCVVKEIFLSINVKLRYQTQWAK 765
GDG LGSG+L++P I PQ++ + KS PWF+ W+ E+FL+IN KL T+ +
Sbjct: 719 HGDGLELGSGTLSIPVIKPQNSFEMEWKSGPWFSFWNDSNAGELFLTINAKLLNLTRSLE 778
Query: 766 DGHILASAQICLPPKKGFVPHAIALPRSSLVSERVGDHVLISKSNAWQIKVNSISGTIDS 825
GH+L+S QI LP K +P AI +S+ E VGD + IS+ ++W++ VN GTI+
Sbjct: 779 AGHLLSSTQIPLPAKGQIIPQAIKKTDTSITCETVGDFIKISQKDSWELMVNVRKGTIEG 838
Query: 826 WKVNNIELMSKGIHPCFWRTPTDNDKGGFYTKPYVSRWREASLDNISFYSSQFSLKELPD 885
WK+ + LM++ I PCFWR PTDNDKGG + Y SRW+ A LDN+ F S+K + D
Sbjct: 839 WKIQGVLLMNEAILPCFWRAPTDNDKGGGDSS-YFSRWKAAQLDNVEFLVESCSVKSITD 897
Query: 886 QTVEISTIYYGLPGNQPKPDETSLSDESESVLFRVQMRGRIYDSGDVILDYEVSPKNDLP 945
++VEI IY ++ LF+V + IY SGD+I ++ V P +DLP
Sbjct: 898 KSVEIEFIYL---------GSSASGSSKSDALFKVNVTYLIYGSGDIITNWFVEPNSDLP 948
Query: 946 PLPRVGVVFNADKSLSRAKWYGRGPFECYPDRKAAAHVGVYESGVDELHVPYIVPGECGG 1005
PLPRVG+ F+ +K+L R +WYG+GPFECYPDRKAAAHV +YE V ++HVPYIVPGE GG
Sbjct: 949 PLPRVGIEFHIEKTLDRVEWYGKGPFECYPDRKAAAHVAIYEHNVGDMHVPYIVPGENGG 1008
Query: 1006 RADVRWVALQDADGFGLFASAYGESPPMQVSASYYGAAELDRATHNHKLVKGDDIEVHLD 1065
R DVRWV ++ DG G++AS YG S MQ++ASYY EL RATH L+KG +IEVHLD
Sbjct: 1009 RTDVRWVTFRNKDGVGIYASTYGSSSLMQMNASYYTTGELHRATHEEDLIKGQNIEVHLD 1068
Query: 1066 HKHMGLGGDDSWSPCVHEQYLLPPARYAFSVRLCPLLPSSSCHDIYHSQLPC 1117
HKHMGLGGDDSW+PCVH+++L+PPA+Y+FS+RLCP+ S+S +IY QLPC
Sbjct: 1069 HKHMGLGGDDSWTPCVHDKFLIPPAQYSFSLRLCPITASTSGLNIYKDQLPC 1120
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 28,093,976
Number of extensions: 1306081
Number of successful extensions: 2444
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2440
Number of HSP's successfully gapped: 1
Length of query: 1117
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 1008
Effective length of database: 8,118,225
Effective search space: 8183170800
Effective search space used: 8183170800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 117 (49.7 bits)