BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0946300 Os01g0946300|Os01g0946300
         (363 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27480.1  | chr1:9544607-9546168 FORWARD LENGTH=433            226   2e-59
>AT1G27480.1 | chr1:9544607-9546168 FORWARD LENGTH=433
          Length = 432

 Score =  226 bits (576), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 141/356 (39%), Positives = 189/356 (53%), Gaps = 22/356 (6%)

Query: 9   RLWENFTALQEDPALSP---CYADQLRLVYDPVAGDYRNVPGVDTRVVSFGSTRGFRSDD 65
           RLW +   L     LSP   C++D++ L YDP   DY+N PGV TRV  FGST+     D
Sbjct: 76  RLWFDAAVL-----LSPFTRCFSDRMMLYYDPDLDDYQNAPGVQTRVPHFGSTKSLLYLD 130

Query: 66  PARKDVC--MERLVXXXXXXXXXXX-XNLFGAPYDFRYAPAAPGLPSGVFSDFTSRLRRL 122
           P  +D    ME LV              + GAPYDFRY  AA G PS V S F   L++L
Sbjct: 131 PRLRDATSYMEHLVKALEKKCGYVNDQTILGAPYDFRYGLAASGHPSRVASQFLQDLKQL 190

Query: 123 VERASERNGGKPVILVTHSLGGLFAMVFLDRTPLPWRRRYIKHFVMLCLGVGGSPLNMWX 182
           VE+ S  N GKPVIL++HSLGGLF + FL+RT   WRR+YIKHFV L    GG+   M  
Sbjct: 191 VEKTSSENEGKPVILLSHSLGGLFVLHFLNRTTPSWRRKYIKHFVALAAPWGGTISQMKT 250

Query: 183 XXXXXXXXXXXXXXXXLTYGNRSFASMFSLLPSPAVYGD--TPLVITRAKNYSADDMPEF 240
                           +    R+  S   LLPS  V+ D   PLV+T   NY+A +M  F
Sbjct: 251 FASGNTLGVPLVNPLLVRRHQRTSESNQWLLPSTKVFHDRTKPLVVTPQVNYTAYEMDRF 310

Query: 241 LSAAGFSDDEVALYRARALPVTLDFRAPLVPLTSINGVGVPTVDKLVFWDGNFSAKPQVV 300
            +  GFS   V  Y+ R LP+T +   P VP+T I G GV T + L++  G F  +P++ 
Sbjct: 311 FADIGFSQG-VVPYKTRVLPLTEELMTPGVPVTCIYGRGVDTPEVLMYGKGGFDKQPEIK 369

Query: 301 NGDGDGQINLDTVLALERLIGDDPDQGYFKSILIPNTTHKGVISDELALKRVVSEI 356
            GDGDG +NL ++ AL+             ++ I   +H  ++ DE+ALK ++ +I
Sbjct: 370 YGDGDGTVNLASLAALK--------VDSLNTVEIDGVSHTSILKDEIALKEIMKQI 417
  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,700,546
Number of extensions: 321111
Number of successful extensions: 658
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 655
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,364,969
Effective search space: 2199986847
Effective search space used: 2199986847
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)