BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0942200 Os01g0942200|AK063265
         (440 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67040.1  | chr5:26757896-26758475 REVERSE LENGTH=166           52   8e-07
AT5G03390.1  | chr5:835260-836609 FORWARD LENGTH=374               51   1e-06

>AT5G67040.1 | chr5:26757896-26758475 REVERSE LENGTH=166
          Length = 165

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%)

Query: 332 RARRFKVFDVDEDKGEWRSRDDVGDAAVLVGINHGECVSTREYPCLKPNCVYYV 385
           + +RF VF  DE   ++   +D+GD  + +G +   C++   YP LKPN +YY+
Sbjct: 76  KTKRFMVFREDEKSKDFSYTEDIGDLCIFLGASEAFCLTASMYPGLKPNSIYYI 129



>AT5G03390.1 | chr5:835260-836609 FORWARD LENGTH=374
          Length = 373

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 331 LRARRFKVFDVDEDKGEWRSRDDVGDAAVLVGINHGECVSTREYPCLKPNCVYY 384
           L+ R F VF  D ++G     +D+GD  + +G     CVS  EYP L+PN VYY
Sbjct: 287 LKTRTFVVFRQDSEQGIGSYTEDIGDLCIFLGHREAFCVSATEYPGLRPNSVYY 340



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,425,356
Number of extensions: 449346
Number of successful extensions: 1085
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 2
Length of query: 440
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 338
Effective length of database: 8,310,137
Effective search space: 2808826306
Effective search space used: 2808826306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)