BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0941800 Os01g0941800|AK107393
(382 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10150.1 | chr3:3137502-3139056 REVERSE LENGTH=368 462 e-130
AT5G63140.1 | chr5:25328237-25329616 FORWARD LENGTH=390 110 1e-24
AT5G57140.1 | chr5:23149926-23151370 FORWARD LENGTH=398 106 3e-23
AT2G46880.1 | chr2:19264910-19266412 REVERSE LENGTH=402 92 5e-19
>AT3G10150.1 | chr3:3137502-3139056 REVERSE LENGTH=368
Length = 367
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/354 (64%), Positives = 270/354 (76%), Gaps = 8/354 (2%)
Query: 31 PDTTASSSSRRPLRFASGGGFKVALFADLHYGENAWTDWGPRQDAGSDRVMAAVLDAEKP 90
P TT + LR G FK+A+FADLH+GE+ WTDWGP QD S VM+AVLDAE P
Sbjct: 17 PTTTGRTVGN--LRVREGSPFKIAIFADLHFGEDTWTDWGPGQDVNSVNVMSAVLDAETP 74
Query: 91 DFVVYLGDLVTANNLGIPNASLYWDRAISPTRGRGIPWATVFGNHDDMPFEWPPEWFSPA 150
DFVVYLGD+VTANN+ I NASL+WD+AISPTR RGIPWAT+FGNHDD F WP +W S +
Sbjct: 75 DFVVYLGDVVTANNIAIQNASLFWDKAISPTRDRGIPWATLFGNHDDASFVWPLDWLSSS 134
Query: 151 GVPPLHXXXXXXXXXXXXFRGTPRLELMTSEVI-RNGLSYSSNGPKDLWPAVSNYVLQVL 209
G+PPL FRGT R+EL+ E+ N LSYS PK+LWP+VSNYVL V
Sbjct: 135 GIPPLR-CPAASDDDGCTFRGTTRVELIQEEIKSSNALSYSMISPKELWPSVSNYVLLVE 193
Query: 210 SQKRDDPAL-LMYFLDSGGGSYPEVISSAQVQWFHSQSQFLNPNGRIPEIIFWHIPSTAY 268
S P + L+YFLDSGGGSYPEVIS+AQV+WF ++S LNP RIPE+IFWHIPS AY
Sbjct: 194 SSDHSKPPVALLYFLDSGGGSYPEVISNAQVEWFKTKSNTLNPYLRIPELIFWHIPSKAY 253
Query: 269 AKVAPKAKSEIRKPCVGSINREEVAPQEAEWGMMDALVKRASVKAIFVGHNHGLDWCCPH 328
KVAP+ I KPCVGSIN+E+V QEAE GMM L R+SVKA+FVGHNHGLDWCCP+
Sbjct: 254 KKVAPRL--WITKPCVGSINKEKVVAQEAENGMMRVLENRSSVKAVFVGHNHGLDWCCPY 311
Query: 329 -EKLWLCFARHTGYGGYGNWPRGARVIEISEQPFSIQSWIRMEDGTTHSDISLS 381
+KLWLCFARHTGYGGYGNWPRG+R++EISE PF I++WIRMEDG+ HS+++L+
Sbjct: 312 KDKLWLCFARHTGYGGYGNWPRGSRILEISEMPFRIKTWIRMEDGSVHSEVNLT 365
>AT5G63140.1 | chr5:25328237-25329616 FORWARD LENGTH=390
Length = 389
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 155/377 (41%), Gaps = 82/377 (21%)
Query: 36 SSSSRRPLRFASGGGFKVALFADLHYGENAWTDWG---PRQ-----DAGSDRVMAAVLDA 87
+++ RR LRF+ G FK+ AD+H+ A T P Q D + M+ V+ A
Sbjct: 32 ATAQRRKLRFSVNGEFKILQVADMHFANGAKTQCQNVLPSQRAHCSDLNTTIFMSRVIAA 91
Query: 88 EKPDFVVYLGDLVTANNLGIPNASLYWDRAISPTRGRGIPWATVFGNHDDMPFEWPPEWF 147
EKPD +V+ GD + + +A + A +P IPW + GNHD
Sbjct: 92 EKPDLIVFTGDNIFG--FDVKDALKSINAAFAPAIASKIPWVAILGNHDQ---------- 139
Query: 148 SPAGVPPLHXXXXXXXXXXXXFRGTPRLELMTSEVIRNGLSYSSNGPKDLWPAVS---NY 204
T + + + +++ + S P + + NY
Sbjct: 140 ----------------------ESTFTRQQVMNHIVKLPNTLSQVNPPEAAHYIDGFGNY 177
Query: 205 VLQVL----SQKRDDPALLMYFLDSGG-GSYPEV-----ISSAQVQWFHSQSQFL----- 249
LQ+ S+ ++ L +YFLDSG S P + I ++Q WF S+ L
Sbjct: 178 NLQIHGAADSKLQNKSVLNLYFLDSGDYSSVPYMEGYDWIKTSQQFWFDRTSKRLKREYN 237
Query: 250 ---NPN-GRIPEIIFWHIPSTAYAKVAPKAKSEIRKPCVGSINREEVAPQEAEWGMMDAL 305
NP G P + ++HIP P+ S K + +E + G L
Sbjct: 238 AKPNPQEGIAPGLAYFHIP-------LPEFLSFDSKNATKGVRQEGTSAASTNSGFFTTL 290
Query: 306 VKRASVKAIFVGHNHGLDWCCPHEKLWLCFARHTGYGGYGN--WPRGARVIEISEQP--- 360
+ R VK++FVGH+H D+C + L LC+ GY YG W R ARV+ +
Sbjct: 291 IARGDVKSVFVGHDHVNDFCGELKGLNLCYGGGFGYHAYGKAGWERRARVVVVDLNKKRK 350
Query: 361 ------FSIQSWIRMED 371
SI++W R++D
Sbjct: 351 GKWGAVKSIKTWKRLDD 367
>AT5G57140.1 | chr5:23149926-23151370 FORWARD LENGTH=398
Length = 397
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 151/379 (39%), Gaps = 99/379 (26%)
Query: 42 PLRFASGGGFKVALFADLHYGENAWT--------DWGPRQDAGSDRVMAAVLDAEKPDFV 93
PLRF G FK+ AD+H+G T ++ D + R + ++++E+PD +
Sbjct: 49 PLRFRDDGTFKILQVADMHFGMGMITRCRDVLDSEFEYCSDLNTTRFLRRMIESERPDLI 108
Query: 94 VYLGDLVTANNLGIPNASLYWDRAISPTRGRGIPWATVFGNHDDMPFEWPPEWFSPAGVP 153
+ GD + ++ SL AI P GIPWA V GNHD
Sbjct: 109 AFTGDNIFGSSTTDAAESLL--EAIGPAIEYGIPWAAVLGNHDHES-------------- 152
Query: 154 PLHXXXXXXXXXXXXFRGTPRLELMTSEVIRNGLSYSSNGP----------KDLWPAVSN 203
RLELMT + + S S P L N
Sbjct: 153 -----------------TLNRLELMTFLSLMD-FSVSQINPLVEDETKGDTMRLIDGFGN 194
Query: 204 YVLQVL----SQKRDDPALLMYFLDSGGGSYPEV------ISSAQVQWF-------HSQS 246
Y ++V S + ++F DSG + I +Q++W HSQ
Sbjct: 195 YRVRVYGAPGSVLANSTVFDLFFFDSGDREIVQGKRTYGWIKESQLRWLQDTSIQGHSQR 254
Query: 247 QFLNPNGRIPEIIFWHIPSTAYAKVAPKAKSEIRK----PCVGSINREEVAPQEAEWGMM 302
+NP P + F+HIP E+R+ P +G +E VA + G++
Sbjct: 255 IHVNP----PALAFFHIPIL-----------EVRELWYTPFIGQF-QEGVACSIVQSGVL 298
Query: 303 DALVKRASVKAIFVGHNHGLDWCCPHEKLWLCFARHTGYGGYG--NWPRGARVIEIS--- 357
V +VKA F+GH+H D+C + +W C+ GY YG NW R ARVIE
Sbjct: 299 QTFVSMGNVKAAFMGHDHVNDFCGTLKGVWFCYGGGFGYHAYGRPNWHRRARVIEAKLGK 358
Query: 358 -----EQPFSIQSWIRMED 371
E I++W R++D
Sbjct: 359 GRDTWEGIKLIKTWKRLDD 377
>AT2G46880.1 | chr2:19264910-19266412 REVERSE LENGTH=402
Length = 401
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 145/377 (38%), Gaps = 87/377 (23%)
Query: 40 RRPLRFASGGGFKVALFADLHYG---ENAWTDWGPRQ-----DAGSDRVMAAVLDAEKPD 91
RR LRF + G FK+ +D+HYG E +D P + D + + + +EKPD
Sbjct: 35 RRQLRFNTDGRFKILQVSDMHYGFGKETQCSDVSPAEFPYCSDLNTTSFLQRTIASEKPD 94
Query: 92 FVVYLGDLVTANNLGIPNASLYWDRAISPTRGRGIPWATVFGNHDDMPFEWPPEWFSPAG 151
+V+ GD V + + D A +P GIPW + GNHD
Sbjct: 95 LIVFSGDNVYGL-CETSDVAKSMDMAFAPAIESGIPWVAILGNHDQ-------------- 139
Query: 152 VPPLHXXXXXXXXXXXXFRGTPRLELMTSEVIRNGLSYSSNGPKDLW----PAVSNYVLQ 207
E M +++ S S P D W NY LQ
Sbjct: 140 ------------------ESDMTRETMMKYIMKLPNSLSQVNPPDAWLYQIDGFGNYNLQ 181
Query: 208 VL----SQKRDDPALLMYFLDSGGGSYPEV---------ISSAQVQWFHSQSQFLN---- 250
+ S L +Y LD GGSY ++ + ++Q W+ S++L
Sbjct: 182 IEGPFGSPLFFKSILNLYLLD--GGSYTKLDGFGYKYDWVKTSQQNWYEHTSKWLEMEHK 239
Query: 251 -----PNGRIPEIIFWHIPSTAYAKVAPKAKSEIRKPCVGSINREEVAPQEAEWGMMDAL 305
N P +++ HIP +A + + + +E G L
Sbjct: 240 RWPFPQNSTAPGLVYLHIPMPEFALFNKSTE-------MTGVRQESTCSPPINSGFFTKL 292
Query: 306 VKRASVKAIFVGHNHGLDWCCPHEKLWLCFARHTGYGGYGN--WPRGARVIEISEQPF-- 361
V+R VK +F GH+H D+C + LC+A GY GYG W R RV+E +
Sbjct: 293 VERGEVKGVFSGHDHVNDFCAELHGINLCYAGGAGYHGYGQVGWARRVRVVEAQLEKTMY 352
Query: 362 -------SIQSWIRMED 371
+I++W R++D
Sbjct: 353 GRWGAVDTIKTWKRLDD 369
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,370,850
Number of extensions: 352203
Number of successful extensions: 699
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 7
Length of query: 382
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 282
Effective length of database: 8,364,969
Effective search space: 2358921258
Effective search space used: 2358921258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)