BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0938600 Os01g0938600|AK073733
(513 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56590.2 | chr3:20965105-20967784 FORWARD LENGTH=490 222 3e-58
AT3G10810.1 | chr3:3381848-3384227 REVERSE LENGTH=497 195 5e-50
AT1G10790.1 | chr1:3596360-3597847 FORWARD LENGTH=337 154 1e-37
>AT3G56590.2 | chr3:20965105-20967784 FORWARD LENGTH=490
Length = 489
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/269 (48%), Positives = 165/269 (61%), Gaps = 7/269 (2%)
Query: 58 LKCXXXXXXXXXXXXXXXFWLPPFARRGR-GSEGPDPGAGFDADIVASFRLHKMVPELNG 116
L+C FWLPPF G DP D IVASF + K + +
Sbjct: 43 LRCVLILAFSAAVFLSALFWLPPFLGFADPGDLDLDPRFK-DHRIVASFDVGKPISFMED 101
Query: 117 NASKLELDIYEEIGIPNSTVVVNSLQLVGS-NWTNVIFSIVPYPKNLTLSSTGLSILRSY 175
N +LE DI +EI P + VVV +L+ +G N T VIF+I P +N + + S++++
Sbjct: 102 NLMQLENDITDEISFPMTKVVVLALERLGDLNRTMVIFAIDPEKENSKIPAEIESLIKAA 161
Query: 176 FMSFVVRQSTLQLTESLFGNSSSFEVLKFPGGITIIPPQTAFLPQKPHATFNFTLNFPIY 235
F + V +Q + +LTESLFG FEVLKFPGGIT+IPPQ F QK FNFTLNF IY
Sbjct: 162 FETLVQKQLSFRLTESLFGEPFFFEVLKFPGGITVIPPQPIFPLQKAQLLFNFTLNFSIY 221
Query: 236 KVQDRIDELKDQMKTGLLLNSYENLYIKLANLNGSTVDPPTIVETSIFLEVGNHQPSVPR 295
++Q +EL Q+K G+ L SYENLYI L+N GSTV PPTIV +S+ L G S R
Sbjct: 222 QIQSNFEELASQLKKGINLASYENLYITLSNSRGSTVAPPTIVHSSVLLTFG----SSSR 277
Query: 296 MKQLAQTITNSSSGNLGLNHTVFGRVKQI 324
+KQLAQTIT+S S NLGLNHTVFG+VKQ+
Sbjct: 278 LKQLAQTITSSHSKNLGLNHTVFGKVKQV 306
>AT3G10810.1 | chr3:3381848-3384227 REVERSE LENGTH=497
Length = 496
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 146/225 (64%), Gaps = 2/225 (0%)
Query: 101 IVASFRLHKMVPELNGNASKLELDIYEEIGIPNSTVVVNSLQLVGS-NWTNVIFSIVPYP 159
IVASF +++ LN N +L+ DI++E+ + V + +++ N T V+F I P
Sbjct: 81 IVASFSINRSASFLNENTLQLQNDIFQEMSYISIKVTILAVEPSDELNITKVVFGIDPDT 140
Query: 160 KNLTLSSTGLSILRSYFMSFVVRQSTLQLTESLFGNSSSFEVLKFPGGITIIPPQTAFLP 219
+ LS ++ F S ++ QSTLQLT+SLFG + FEVLKFPGGIT+IPPQ+AF
Sbjct: 141 GYREILPLSLSSIKEMFESVLINQSTLQLTKSLFGETFLFEVLKFPGGITVIPPQSAFPL 200
Query: 220 QKPHATFNFTLNFPIYKVQDRIDELKDQMKTGLLLNSYENLYIKLANLNGSTVDPPTIVE 279
QK FNFTLN+ I+++Q + L Q+K GL L YENLY+ L+N GSTV PPT V
Sbjct: 201 QKFKIVFNFTLNYSIHQIQINFNTLASQLKNGLNLAPYENLYVSLSNSEGSTVSPPTTVH 260
Query: 280 TSIFLEVGNHQPSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQI 324
+S+ L VG S PR+KQL TIT S S NLGLN+T+FG+VKQ+
Sbjct: 261 SSVLLRVGTSNSS-PRLKQLTDTITGSRSKNLGLNNTIFGKVKQV 304
>AT1G10790.1 | chr1:3596360-3597847 FORWARD LENGTH=337
Length = 336
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 145/294 (49%), Gaps = 10/294 (3%)
Query: 58 LKCXXXXXXXXXXXXXXXFWLPPFARRGRGSEGPDPGAGFDADIVASFRLHKMVPELNGN 117
L+C FWL F RR D +A + ASFRL K V E+ +
Sbjct: 43 LRCLIVLVLSCAILLSAIFWL--FPRRSVSEFKADGTVKLNASVQASFRLQKPVSEVVRH 100
Query: 118 ASKLELDIYEEIGIPN-STVVVNSLQLVG-SNWTNVIFSIVPYPKNLTLSSTGLSILRSY 175
K+E DI IG+ N S V V SL G SN+T+V F+++P P + +S LS+LRS
Sbjct: 101 KGKIEHDILRSIGLSNNSKVTVLSLNQSGASNYTDVEFAVLPVPPDHEISKHSLSLLRSS 160
Query: 176 FMSFVVRQSTLQLTESLFGNSSSFEVLKFPGGITIIPPQTAFLPQKPHATFNFTLNFPIY 235
F+ ++S L+LT S FG +SF+VLKFPGGIT+ P + A + F+ T+ I
Sbjct: 161 FVKLFAKRSKLKLTTSGFGKPTSFQVLKFPGGITVDPLEPAPVSGVALVLFSVTIKTSIS 220
Query: 236 KVQDRIDELKDQMKTGLLLNSYENLYIKLANLNGSTVDPPTIVETSIFLEVGN--HQPSV 293
VQDR+D L + L L YE+++ +L N GST+ PP + + + HQ
Sbjct: 221 TVQDRLDLLNGLFEHMLSLEPYESVHFQLTNKQGSTISPPLTFQVYVAFTMRKYLHQ--- 277
Query: 294 PRMKQLAQTITNSSSGNLGLNHTVFGRVKQIXXXXXXXXXXXXXXXXEAPSPAP 347
R+ Q I S + NLGL+ VFG VK I AP+P P
Sbjct: 278 -RLNHFTQIIQTSRAKNLGLDEAVFGEVKDITFSTYLDGKVPDSDLELAPAPTP 330
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,995,555
Number of extensions: 413096
Number of successful extensions: 1519
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1513
Number of HSP's successfully gapped: 3
Length of query: 513
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 410
Effective length of database: 8,282,721
Effective search space: 3395915610
Effective search space used: 3395915610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)