BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0936200 Os01g0936200|AK101890
         (194 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18640.1  | chr5:6213283-6215494 FORWARD LENGTH=358            246   4e-66
AT5G18630.1  | chr5:6202965-6205448 FORWARD LENGTH=359            243   4e-65

>AT5G18640.1 | chr5:6213283-6215494 FORWARD LENGTH=358
          Length = 357

 Score =  246 bits (629), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 148/191 (77%), Gaps = 2/191 (1%)

Query: 2   ERRGLLKAALLVCLIVLCSGREIQVIQRHPSTTIYNPKLAKTLVEYASAIYTADLTQLFT 61
           ++R     A+ VCL+    GR ++  +      +YN  LA TLVEY SA+Y +DL++LFT
Sbjct: 3   QKRWFFLLAIFVCLVSSSCGRVLK-FKSDDGRPVYNHTLAITLVEYTSAVYMSDLSELFT 61

Query: 62  WTCARCGDLIEGFEMMDIIVDVENCLQAYVGFASDINAIVVVFRGTQENSIQNWIEDLLW 121
           WTC RC  L +GFE+++IIVDVE+CLQAYVG A D+NAI++ FRGTQE+SIQNW+ DL W
Sbjct: 62  WTCERCNGLTKGFEVIEIIVDVEHCLQAYVGVAKDLNAIIIAFRGTQEHSIQNWVSDLFW 121

Query: 122 KQLDLDYPGMPEAMVHRGFYSAYHNTTMRDGVVSGIQKTRKLFG-DVPIMVTGHSMGGAM 180
           KQLDL+YP MP+AMVH GFYSAYHNTT+R  V+  +++ ++ +G ++ IMVTGHSMGGAM
Sbjct: 122 KQLDLNYPDMPDAMVHHGFYSAYHNTTVRPAVLDAVKRAKESYGANLNIMVTGHSMGGAM 181

Query: 181 ASFCALDLVVS 191
           ASFCALDLVV+
Sbjct: 182 ASFCALDLVVN 192



>AT5G18630.1 | chr5:6202965-6205448 FORWARD LENGTH=359
          Length = 358

 Score =  243 bits (621), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 111/191 (58%), Positives = 145/191 (75%), Gaps = 1/191 (0%)

Query: 2   ERRGLLKAALLVCLIVLCSGREIQVIQRHPSTTIYNPKLAKTLVEYASAIYTADLTQLFT 61
           ++R L   A+   L+    GR +  ++      +YN  LA TLVEYASA+Y +DLT+LFT
Sbjct: 3   QKRLLFLLAVFTFLVSSSYGRGVLKLKSDDDRPVYNHTLAVTLVEYASAVYESDLTKLFT 62

Query: 62  WTCARCGDLIEGFEMMDIIVDVENCLQAYVGFASDINAIVVVFRGTQENSIQNWIEDLLW 121
           WTC RC  L + FE++++I DVE+CLQAYVG A D+NAI++ FRGTQE+SIQNW+ DL W
Sbjct: 63  WTCERCNGLTKDFEVIEVIFDVEHCLQAYVGVAKDLNAIIIAFRGTQEHSIQNWVSDLFW 122

Query: 122 KQLDLDYPGMPEAMVHRGFYSAYHNTTMRDGVVSGIQKTRKLFG-DVPIMVTGHSMGGAM 180
           KQLDL+YP MP+AMVH GFYSAYHNTT+R  V+  I + +K++G ++ I+VTGHSMGGAM
Sbjct: 123 KQLDLNYPDMPDAMVHHGFYSAYHNTTLRPAVLDAITRVKKVYGANINIIVTGHSMGGAM 182

Query: 181 ASFCALDLVVS 191
           ASFC LDLVV+
Sbjct: 183 ASFCGLDLVVN 193



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,078,344
Number of extensions: 155000
Number of successful extensions: 573
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 3
Length of query: 194
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 101
Effective length of database: 8,556,881
Effective search space: 864244981
Effective search space used: 864244981
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)