BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0934300 Os01g0934300|AK066698
         (829 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02560.1  | chr4:1123656-1128252 REVERSE LENGTH=954            222   8e-58
AT1G19860.1  | chr1:6891654-6894400 REVERSE LENGTH=414             72   2e-12

>AT4G02560.1 | chr4:1123656-1128252 REVERSE LENGTH=954
          Length = 953

 Score =  222 bits (565), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 192/512 (37%), Positives = 264/512 (51%), Gaps = 99/512 (19%)

Query: 4   SDISSKARNXXXXXXXXXXXXQALKK---------SQKDLICKQRISEILRDESWKSEVD 54
           SDIS++A+             QA+KK         SQ  L+ KQ I+EI+ D S      
Sbjct: 293 SDISNRAKGLLSRWTKLFAKIQAMKKQNRNSSQIDSQSQLLLKQSIAEIMGDSSN----- 347

Query: 55  ITEDILALTDDASES-RMPEPRKTPLLLTASADESNKKSSLQTK---SKEKRKVLLVEHP 110
             EDIL+L++  SE+ R  E  + P LL  SAD+S KK  L +    +KE+RKV +VE P
Sbjct: 348 -PEDILSLSNGKSENVRRIESSQGPKLLLTSADDSTKKHMLGSNPSYNKERRKVQMVEQP 406

Query: 111 NRKAAGKNVNPVRSTSTNNSRPLSADDIQKAKMRAMFMQEKYGKVD-------TSKVI-- 161
            +KAAGK+   VR  ++  SRP+SADDIQKAKMRA++MQ K  K D        SK++  
Sbjct: 407 GQKAAGKSPQTVRIGTSGRSRPMSADDIQKAKMRALYMQSKNSKKDPLPSAIGDSKIVAP 466

Query: 162 EKPHMMEIQKPSGLVDSNVPLVPRTPLTSIIK--------------------------QP 195
           EKP  +   K S  + +N      TP+ S ++                          QP
Sbjct: 467 EKPLALHSAKDSPPIQNNEAKTEDTPVLSTVQPVNGFSTIQPVNGPSAVQPVNGPLAVQP 526

Query: 196 VD-PS---PSTSKQSTLSP--------PDKPEIAVSLKLNVTAK---ENFIEKLDSKRVI 240
           V+ PS   P     + + P        P  P  ++S K+ V  K   +  ++    K++ 
Sbjct: 527 VNGPSALQPVNGPSAVIVPVQADEIKKPSTPPKSISSKVGVMMKMSSQTILKNCKRKQID 586

Query: 241 WQIPPEVWIDPAWSLGAGENSKEFEVQTQRNRREKETFYASLKDIPLNPKGPWDVEMDFD 300
           W +PP + +D  W + AG NSKE +VQ  RNRRE+ET Y SL+ IPLNPK PWD EMD+D
Sbjct: 587 WHVPPGMELDELWRVAAGGNSKEADVQRNRNRRERETTYQSLQTIPLNPKEPWDREMDYD 646

Query: 301 DSLTPEIPIEQPPDADAME-TDSVSTAPPNIVVPVVDKQIGSTSSVSPAVAAGANGATSE 359
           DSLTPEIP +QPP+    E  DS+            +++I +      A    ++ ++ E
Sbjct: 647 DSLTPEIPSQQPPEESLTEPQDSLD-----------ERRIAAG-----AATTSSSLSSPE 690

Query: 360 PDLELLAVLLKNPQLVFALTSNQGGTLPSEQTVALLDMLKQTGLGLSELVNSLANNSGVQ 419
           PDLELLA LLKNP LV+ALTS +   L  +  V LLD++K TG   S    S ++N  V+
Sbjct: 691 PDLELLAALLKNPDLVYALTSGKPSNLAGQDMVKLLDVIK-TGAPNS----SSSSNKQVE 745

Query: 420 KEPESGPEAIPASLPSPTPPKDLIARDGWSSE 451
                  E +  SLPSPTP  +     GW  E
Sbjct: 746 -------ERVEVSLPSPTPSTN-PGMSGWGQE 769



>AT1G19860.1 | chr1:6891654-6894400 REVERSE LENGTH=414
          Length = 413

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/175 (34%), Positives = 84/175 (48%), Gaps = 16/175 (9%)

Query: 224 VTAKENFIEKLDSKRVIWQIPPEVWIDPAWSLGAGENSKEFEVQTQRNRREKETFYASLK 283
            +A E+ I+  D   + W+   ++ +D  W + AG+ SKE E Q +R  R  E FY    
Sbjct: 62  FSANESQIKLSDIPLIKWKCSVQILLDREWKVVAGDESKEVEAQNERELRVLEAFYPGAS 121

Query: 284 DIPLNPKGPWDVE-MDFDDSLTPEIPIEQPPDADAMETDSVSTAPPNIVV-----PVVDK 337
            IP NP  P DVE    DD  T  IPI  P + D +  DS S  P    V     P +  
Sbjct: 122 SIPPNPSVPADVEDSHHDDQQTIVIPI-LPVEDDDIAMDSASDFPTQSGVDVGTEPSITD 180

Query: 338 QIGSTSSVSP-------AVAAGANGA--TSEPDLELLAVLLKNPQLVFALTSNQG 383
           +  STSS  P       A++A +N     S  D +LL  +L NP+LV  L +N+G
Sbjct: 181 ENTSTSSTLPAGPDIMAALSAISNSKEQGSMIDQDLLIKILSNPKLVENLVANRG 235



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.122    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,485,234
Number of extensions: 833313
Number of successful extensions: 2978
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2976
Number of HSP's successfully gapped: 4
Length of query: 829
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 722
Effective length of database: 8,173,057
Effective search space: 5900947154
Effective search space used: 5900947154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 116 (49.3 bits)