BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0933500 Os01g0933500|AY304538
(127 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G24860.1 | chr5:8541822-8542154 FORWARD LENGTH=111 132 6e-32
AT5G10625.1 | chr5:3358934-3359272 FORWARD LENGTH=113 129 4e-31
AT4G31380.1 | chr4:15229837-15230382 FORWARD LENGTH=182 129 4e-31
>AT5G24860.1 | chr5:8541822-8542154 FORWARD LENGTH=111
Length = 110
Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 87/126 (69%), Gaps = 18/126 (14%)
Query: 1 MSGVWVFRNGVVKLVENPPASANSXXXXXXXXXXXXXXIRRKALLHMPTGEVVTSYASLE 60
MSGVWVF+NGV++LVENP S + RRK ++++PTGEVV+SY++LE
Sbjct: 1 MSGVWVFKNGVIRLVENPNQSGSDTQN------------RRKVMVYLPTGEVVSSYSTLE 48
Query: 61 RKLAALGWERYYSXXXXXXXXXXMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD 120
+ L +LGWERY+ +LQFHKRSS+DLISLP+DF++F SV+MYDIVVKN +
Sbjct: 49 QILQSLGWERYFGGGDTD------LLQFHKRSSIDLISLPRDFTKFNSVYMYDIVVKNPN 102
Query: 121 AFRVID 126
F V D
Sbjct: 103 YFHVRD 108
>AT5G10625.1 | chr5:3358934-3359272 FORWARD LENGTH=113
Length = 112
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 16/126 (12%)
Query: 1 MSGVWVFRNGVVKLVENPPASANSXXXXXXXXXXXXXXIRRKALLHMPTGEVVTSYASLE 60
MSGVWVF NGV++LVENP S RR L+++PTGE V+SY+SLE
Sbjct: 1 MSGVWVFNNGVIRLVENPNQSGGVSTQSHG---------RRNVLVYLPTGEAVSSYSSLE 51
Query: 61 RKLAALGWERYYSXXXXXXXXXXMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKNRD 120
+ L +LGWERY+S ++Q+HKRSS+DLISLP+DFS+F SV+MYDIVVKN +
Sbjct: 52 QILRSLGWERYFSGDSD-------LIQYHKRSSIDLISLPRDFSKFNSVYMYDIVVKNPN 104
Query: 121 AFRVID 126
+F V D
Sbjct: 105 SFHVRD 110
>AT4G31380.1 | chr4:15229837-15230382 FORWARD LENGTH=182
Length = 181
Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 87/129 (67%), Gaps = 7/129 (5%)
Query: 1 MSGVWVF-RNGVVKLVENP-PASANSXXXXXXXXXXXXXXIRRKALLHMPTGEVVTSYAS 58
MSGVWVF +NGV++LVENP SA +RRK L+H+P+ EVV+SY S
Sbjct: 58 MSGVWVFNKNGVMRLVENPYNQSAGDSSESSSSGGNQQQRMRRKILVHLPSSEVVSSYGS 117
Query: 59 LERKLAALGWERYYSXXXXXXXXXXMMLQFHKRSSVDLISLPKDFSQFGSVHMYDIVVKN 118
LE+ L LGWERYYS +LQFHKR+S+DLISLP+DFS+F S+HMYDIVVKN
Sbjct: 118 LEKILKNLGWERYYSGDNTDH-----LLQFHKRTSIDLISLPRDFSKFNSIHMYDIVVKN 172
Query: 119 RDAFRVIDV 127
+ F V D+
Sbjct: 173 PNVFHVRDM 181
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,113,329
Number of extensions: 51821
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 3
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 105 (45.1 bits)