BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0933200 Os01g0933200|J065092L15
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G19090.1 | chr5:6387910-6389855 FORWARD LENGTH=588 73 2e-13
AT5G27690.1 | chr5:9803796-9805036 FORWARD LENGTH=353 72 4e-13
AT3G06130.1 | chr3:1853048-1854673 REVERSE LENGTH=474 71 8e-13
AT1G56210.1 | chr1:21035715-21037019 FORWARD LENGTH=365 67 1e-11
AT1G23000.1 | chr1:8143614-8144865 FORWARD LENGTH=359 65 5e-11
AT3G05220.1 | chr3:1488808-1491171 FORWARD LENGTH=578 64 9e-11
AT5G37860.1 | chr5:15069578-15070555 REVERSE LENGTH=263 60 2e-09
AT5G02600.2 | chr5:584486-586855 REVERSE LENGTH=320 50 2e-06
>AT5G19090.1 | chr5:6387910-6389855 FORWARD LENGTH=588
Length = 587
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 3 SGSEPIECQVLVLRVSIHCEGCKKKVKKVLQHVPGVFRCDVDARSNKVIVTASRNMDANI 62
S E ++ Q VL+V+IHC+GCK+KVKK+LQ + GVF +DA K VT S N+D ++
Sbjct: 2 SKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDAELGK--VTVSGNVDPSV 59
Query: 63 LVAKLRKSG 71
L+ KL KSG
Sbjct: 60 LIKKLLKSG 68
>AT5G27690.1 | chr5:9803796-9805036 FORWARD LENGTH=353
Length = 352
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 6 EPIECQVLVLRVSIHCEGCKKKVKKVLQHVPGVFRCDVDARSNKVIVTASRNMDANILVA 65
EP+ VLRVSIHCEGCK+K+KK+L + GV+ ++D + KV V N++ IL+
Sbjct: 25 EPLRYTTWVLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIG--NVEPEILIK 82
Query: 66 KLRKSG 71
K+ K+G
Sbjct: 83 KIMKAG 88
>AT3G06130.1 | chr3:1853048-1854673 REVERSE LENGTH=474
Length = 473
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 3 SGSEPIECQVLVLRVSIHCEGCKKKVKKVLQHVPGVFRCDVDARSNKVIVTASRNMDANI 62
S E ++ Q VL+V+IHC+GCK+KVKK+LQ + GVF +D+ KV V+ S +D ++
Sbjct: 2 SKEEFMKIQTCVLKVNIHCDGCKQKVKKILQKIEGVFTTKIDSEQGKVTVSGS--VDPSV 59
Query: 63 LVAKLRKSG 71
L+ KL KSG
Sbjct: 60 LIKKLAKSG 68
>AT1G56210.1 | chr1:21035715-21037019 FORWARD LENGTH=365
Length = 364
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 14 VLRVSIHCEGCKKKVKKVLQHVPGVFRCDVDARSNKVIVTASRNMDANILVAKLRKSG 71
L+VSIHCEGCK+KVKK+L + GVF+ D+D + +KV V + IL+ KL K+G
Sbjct: 43 TLKVSIHCEGCKRKVKKILTSIEGVFKVDIDVKQHKVTVIGI--ISPEILLKKLNKAG 98
>AT1G23000.1 | chr1:8143614-8144865 FORWARD LENGTH=359
Length = 358
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 8 IECQVLVLRVSIHCEGCKKKVKKVLQHVPGVFRCDVDARSNKVIVTASRNMDANILVAKL 67
++ Q LRV+IHCEGC KKVKK+LQ + GV ++A KV V+ S +D+ L+ KL
Sbjct: 10 LKIQTFSLRVNIHCEGCNKKVKKLLQRIEGVCHVKIEAEHQKVTVSGS--VDSATLINKL 67
Query: 68 RKSG 71
K+G
Sbjct: 68 VKAG 71
>AT3G05220.1 | chr3:1488808-1491171 FORWARD LENGTH=578
Length = 577
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 8 IECQVLVLRVSIHCEGCKKKVKKVLQHVPGVFRCDVDARSNKVIVTASRNMDANILVAKL 67
++ Q VL+V++HCEGCK KVKK LQ + GV+ D +V VT N+D +LV KL
Sbjct: 7 MKLQTCVLKVNVHCEGCKHKVKKQLQKIEGVYSVKADVEQGRVTVTG--NIDPALLVKKL 64
Query: 68 RKSG 71
KSG
Sbjct: 65 SKSG 68
>AT5G37860.1 | chr5:15069578-15070555 REVERSE LENGTH=263
Length = 262
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 6 EPIECQVLVLRVSIHCEGCKKKVKKVLQHVPGVFRCDVDARSNKVIVTASRNMDANILVA 65
EP++ L+V+I+C+GCK KVKK L+ + GV+ D+D VIV N+D ILV
Sbjct: 7 EPLKT--YFLKVNINCQGCKMKVKKTLRKIEGVYSVDIDTDQEAVIVRG--NLDPEILVK 62
Query: 66 KLRKSG 71
KL K G
Sbjct: 63 KLNKRG 68
>AT5G02600.2 | chr5:584486-586855 REVERSE LENGTH=320
Length = 319
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 11 QVLVLRVSIHCEGCKKKVKKVLQHVPGVFRCDVDARSNKVIVTA 54
QV+VLRVS+HC+GC KVKK L + GV ++D + KV VT
Sbjct: 250 QVVVLRVSLHCKGCAGKVKKHLSKLKGVTSYNIDFAAKKVTVTG 293
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.305 0.124 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,969,673
Number of extensions: 232116
Number of successful extensions: 1990
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2012
Number of HSP's successfully gapped: 8
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 112 (47.8 bits)