BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0932600 Os01g0932600|AK072340
         (806 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15840.1  | chr4:8996963-9000852 FORWARD LENGTH=837            840   0.0  

>AT4G15840.1 | chr4:8996963-9000852 FORWARD LENGTH=837
          Length = 836

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/809 (55%), Positives = 560/809 (69%), Gaps = 57/809 (7%)

Query: 37  AAAELRPVDCNLAALCDHVQAEGFGSGAFSDVVVEAMGATYRLHRLIISRSAYFRNMLHG 96
           + +ELR +DCNL +LCDH+Q+EGFGSGAFSDVVV+AMG++Y LHRLI+SRS+YFR ML G
Sbjct: 46  STSELRSLDCNLTSLCDHIQSEGFGSGAFSDVVVKAMGSSYHLHRLILSRSSYFRTMLQG 105

Query: 97  PWREAGAPTVVLHIDDPNIDSEAIAIALAYLYGQPPKLNDNNAFRVLAAASFLDLQDLCT 156
           PW+EA +P V L +DD N++ +AI++ALAYLYG  PKL+D+NAFRVLAAASFLDLQDLC 
Sbjct: 106 PWKEASSPVVNLLVDDKNVNGDAISVALAYLYGYHPKLDDDNAFRVLAAASFLDLQDLCA 165

Query: 157 ICTDFIISELWTSNFLQYQLFAESQDYGSHGERVRNACWGYLCQSATLELREVLPKLSSQ 216
           ICTDFIISEL TSNFL YQ+FAESQDYG HGERVRNACWGYLCQS  +ELRE+LPKLS+Q
Sbjct: 166 ICTDFIISELRTSNFLAYQVFAESQDYGIHGERVRNACWGYLCQSGAVELREMLPKLSAQ 225

Query: 217 TLHALLTSDELWVPNEEKRFELALYALLAKVTLSDVEVSGNENLNLTSSSANSDHSMRKG 276
           TL ALLTSDELWVP+EEKRFELALYA +A   LS+ + S  ++     +S   D ++ KG
Sbjct: 226 TLCALLTSDELWVPSEEKRFELALYAFIANSALSNSDHSNQDSRFERETSFPLDSAISKG 285

Query: 277 KSPMNEAGEEQL---MGSELQNLKLHDNTETISAHNTSDIPDMN----------AEASRR 323
           K+ M++     L   +G       L D ++ +    T  + D             ++S  
Sbjct: 286 KNVMDDFSFRSLDCKLGHLDIEADLRDASDDVIVPLTEGVIDFQRGVSGSNLVFQQSSNS 345

Query: 324 KVN---------DFSTG------GPSGESTSYQFNEDIWLSSDQTRNYLSRTSSSNGLVP 368
           + N         D + G      GPS E+  Y  + D WLS   +RN  +  SSS+G V 
Sbjct: 346 QTNFGRPCTSVVDKTEGSVVAIEGPSEEA--YHLSNDSWLSGADSRNSPTLGSSSDGFVV 403

Query: 369 TEWGK--PNAPLWXXXXXXXXXXXXXXXSS-SLSADEYNAFMNIFERGSLLYCNMSFDAL 425
            EWG    +A  W                    + +EY+AF+N FE GSLLYCNMSF+ L
Sbjct: 404 NEWGNCGVSALTWGGRVVGTRQGTGSVKGKYGFTEEEYSAFVNTFEGGSLLYCNMSFEIL 463

Query: 426 LSVRKQLEEFGFPCKAVNDGLWLQMLLCHRVQAIVADTCTNCCLTGNSCACKQAHVSSH- 484
           L+ RK+LEE GFPCKAVNDGLWLQMLL  RVQ + A+TC  CCL   +CACKQ    SH 
Sbjct: 464 LNARKELEELGFPCKAVNDGLWLQMLLSQRVQEVAANTCKRCCLISIACACKQGFGVSHG 523

Query: 485 ----HHYRQEHDRSSASGTVGNIYLTDA-HGEGNAVFGPVRVNVRGA-VDGLAGIGRGNS 538
               ++Y QE+ +++  G + N+Y+ ++  G+G  +F PVR++VRG  +DGLAGIG   +
Sbjct: 524 ATFNNYYCQENVQNNMMGDMDNVYVPESSQGDGIGIFKPVRISVRGQHIDGLAGIGCEAT 583

Query: 539 NVPGAAWAPTRYVFSRVPYGLGSRNGQQPFANDESEPRVDYNGDISGDGLTALVNLSQES 598
            VP  AW PT +V+SRVP    +RNGQQ  A+D SE R+D +G+IS DGLTALV LSQ +
Sbjct: 584 FVPPPAWPPTPFVYSRVPI---NRNGQQSIASDGSEGRIDQSGEISKDGLTALVGLSQGT 640

Query: 599 SASHHQTESIFETGIQVRYSGAASVSTPG-GSSLQMQESKEHELGSNLETTENTTISLDM 657
           S            G+     G  +    G G+++ M E KE  +G+  E   + TISLD 
Sbjct: 641 S------------GVGNNPRGEQTEGGRGSGATVGMSEPKEPSVGTEWENA-SCTISLDT 687

Query: 658 KTPLSHFPPFRFGVEFEDVHRLADSQVKHSTEVFYAGSLWKVSVQAFNDEDPHGRRTLGL 717
           KTPL HFPPFRFGVEFEDVHRLA+  V+HS E FYAGSLWK+S+QAFNDEDP GRRT+GL
Sbjct: 688 KTPLCHFPPFRFGVEFEDVHRLANGHVEHSPEFFYAGSLWKISIQAFNDEDPQGRRTIGL 747

Query: 718 FLHRRKAEPLDPLRKANMYVDHREKVTARYQLICPSKREVMIFGSLKQAGTLLPKAPKGW 777
           FLHRRKAE +D +RK ++Y+D R+KVTARYQLICPSKREVM+FGS KQ GTLLPKAPKGW
Sbjct: 748 FLHRRKAEIVDSVRKVHVYIDPRDKVTARYQLICPSKREVMLFGSFKQRGTLLPKAPKGW 807

Query: 778 GWRTAILFDELGDLLQGGSLRIAAVVQLV 806
           GWRTA+LFDEL +LLQ G+LR+AAVVQLV
Sbjct: 808 GWRTALLFDELSELLQNGALRVAAVVQLV 836



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,881,152
Number of extensions: 722773
Number of successful extensions: 1980
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1974
Number of HSP's successfully gapped: 2
Length of query: 806
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 699
Effective length of database: 8,173,057
Effective search space: 5712966843
Effective search space used: 5712966843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)