BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0931300 Os01g0931300|AK068196
         (507 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05510.1  | chr3:1595576-1598074 FORWARD LENGTH=449            424   e-119
AT1G78690.1  | chr1:29597002-29598409 FORWARD LENGTH=285          144   9e-35

>AT3G05510.1 | chr3:1595576-1598074 FORWARD LENGTH=449
          Length = 448

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/461 (47%), Positives = 297/461 (64%), Gaps = 54/461 (11%)

Query: 16  ARVVGAQIRSRFRVGVAPXXXXXXXXXXXXXXASEAVRQWTERVRSLWQREKSTDQISSS 75
           A +   ++R RFR+ V                +S  + +W  R R+ ++RE         
Sbjct: 15  ALLFNLKLRDRFRIAVDDHRGRATVFSPDGCFSS-TIHRWVTRFRN-FRRE--------- 63

Query: 76  PGTSQVAAAAKPSSSALRFYRKKVGKEVDGIEDSVIFRSLQALAVPLIGNACHIFMHGLN 135
                    + PS  A  FYR++V K++   E+S +FR LQ +AVPLIGNACH+FM+G N
Sbjct: 64  ---------SLPSPPA--FYRRRVSKDLTAEEESALFRMLQTVAVPLIGNACHVFMNGFN 112

Query: 136 SVQIYGAEKLQQALQERPKGKPLLTVSNHVAAMDDPFVIASILPPSVMLEAQKLRWTLCA 195
            VQ+YG EKL  AL  RPK KPL+TVSNHVA++DDPFVIAS+LPP  +L+A+ LRWTLCA
Sbjct: 113 RVQVYGLEKLHDALLNRPKNKPLVTVSNHVASVDDPFVIASLLPPKFLLDARNLRWTLCA 172

Query: 196 SDRCFTNPILSTFFRSVKVLPVSRGDGIYQKGMDMALSKLNNGGWVHIFPEGSRSKDGGK 255
           +DRCF NP+ S F RSVKVLP+SRG+GIYQ+GMD+A+SKLNNGGWVHIFPEGSRS+DGGK
Sbjct: 173 TDRCFKNPVTSAFSRSVKVLPISRGEGIYQQGMDIAISKLNNGGWVHIFPEGSRSRDGGK 232

Query: 256 TVAPAKRGVGRLVMDADSLPVVIPFVHTGMQDIMPVGKRIPRAGKRVIVVVGDPINFNDL 315
           T+  AKRG+GRL++DAD+LP+V+PFVHTGMQDIMPVG  +PR GK V V++GDPI+FND+
Sbjct: 233 TMGSAKRGIGRLILDADTLPMVVPFVHTGMQDIMPVGASVPRIGKTVTVIIGDPIHFNDI 292

Query: 316 IIDNSDETQHISRGILYDKATERIGQRLQELKAEVDRLAAEQKSELQHHHARDTVNYGTR 375
           +  +++  QH+SR  LYD  + RIGQRL +LKA+VDR+  EQ+S +  H+A+   +    
Sbjct: 293 L--STEGAQHVSRKHLYDAVSSRIGQRLYDLKAQVDRVYIEQQS-MMSHNAKTPSDRAAE 349

Query: 376 LWQQVDWEAFGMESSMLSPEPSDVQEPLKKAKPVLHLESEHAKPELHLEPEQAKHELHTE 435
           ++ +VDW++FGM +          +   +    ++        P+  + PE         
Sbjct: 350 IFHRVDWDSFGMGAQFSEESSPSSKPIGQSDDRIVR------SPKRRVSPEG-------- 395

Query: 436 QCVPAAPSAEICSNFGVPLFFRQHTDPSELMGFAARGLLKN 476
                          GV L  ++  D +E+MGFAARGLL N
Sbjct: 396 ---------------GVSLKIKKLMDSTEMMGFAARGLLMN 421



>AT1G78690.1 | chr1:29597002-29598409 FORWARD LENGTH=285
          Length = 284

 Score =  144 bits (364), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/218 (36%), Positives = 121/218 (55%), Gaps = 22/218 (10%)

Query: 105 GIEDSVIFRSLQALAVPLIGNACHIFMHGLNSVQIYGAEKLQQALQERPKGKPLLTVSNH 164
           GI  + +  ++ A A   + N C       N   ++ A+ L   +Q RP G PL+TVSNH
Sbjct: 16  GIPRNTVIMAVSAFA-KAVANLC-------NKSSVHNADTLMNLVQSRPPGVPLITVSNH 67

Query: 165 VAAMDDPFVIASILPPSVMLEAQKLRWTLCASDRCFTNPILSTFFRSVKVLPVSRGDGIY 224
           ++ +DDP V+       + L+ +  RW L A D CF NPI S  FR+ K +P++RG GIY
Sbjct: 68  MSTLDDP-VMWGAFKGLLSLDPELARWVLAAEDICFRNPIFSYIFRTGKCIPITRGGGIY 126

Query: 225 QKGMDMALSKLNNGGWVHIFPEGSRSKDGGKTVAPAKR---GVGRLVMDADSLPVVIPFV 281
           Q+ M+ AL +L +G W+H FPEG   +D      P +R   G   L+  +   P+V+P +
Sbjct: 127 QENMNEALQRLKDGSWLHTFPEGKVFQDD----VPIRRLKWGTASLIARSPVTPIVLPII 182

Query: 282 HTGMQDIMP----VGKR--IPRAGKRVIVVVGDPINFN 313
           H G +++MP     G+R  +P   K + VVVG+PI F+
Sbjct: 183 HRGFEEMMPENYNNGRRPLVPLPNKHLKVVVGEPIEFD 220



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,870,828
Number of extensions: 460280
Number of successful extensions: 1181
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 404
Effective length of database: 8,282,721
Effective search space: 3346219284
Effective search space used: 3346219284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)