BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0931200 Os01g0931200|AK063586
(317 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15830.1 | chr4:8995285-8996548 REVERSE LENGTH=297 233 7e-62
AT3G01450.1 | chr3:169903-171379 REVERSE LENGTH=327 154 4e-38
AT5G14790.1 | chr5:4784058-4785508 FORWARD LENGTH=347 153 1e-37
AT3G18530.1 | chr3:6373535-6375050 REVERSE LENGTH=362 84 1e-16
>AT4G15830.1 | chr4:8995285-8996548 REVERSE LENGTH=297
Length = 296
Score = 233 bits (595), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/266 (48%), Positives = 164/266 (61%), Gaps = 14/266 (5%)
Query: 1 MALRALDNTLPMASAERXXXXXXXXXXXXXXXXXXXXEGKRKKNDENSAPKATTEQAVEY 60
MALR ++N LP+ S ER NDEN+ P A E VEY
Sbjct: 1 MALRNIENALPI-SQERPKKLAKLSKQPEIGL-----------NDENN-PVAVAESTVEY 47
Query: 61 VRSEDLQPVPHPKAKAAGLVAELDSKDWIRACDALNDARRLAIHHPSLLNPILGKVMLAI 120
V SE+L+P P++ L+ EL SKDWI+ CD+LN+ RR AIHH SLL PIL K+++ +
Sbjct: 48 VASENLKPFSDPESSVQRLLEELASKDWIKVCDSLNNTRRFAIHHSSLLLPILEKLIVVM 107
Query: 121 VKTMKSPRSAVCKTSIMACTDVFDSFGN-LLSSASDDAFDKXXXXXXXKASQDKRFVXXX 179
VK MK+PRSA+CKTSIM C+D+F ++G LL + D KASQDK+FV
Sbjct: 108 VKAMKNPRSALCKTSIMTCSDIFTAYGEKLLEGPHLKSMDDLLLQLLMKASQDKKFVCEE 167
Query: 180 XXXXXXXXXXXXPPLPLLRKLKAYVHHANLRVRAKAAVAMSQCASRMDVATMKEFGMSAM 239
LPLLRKL++YV H+N RVRAKAAV+ S C S+M+V M+EFGM +
Sbjct: 168 AEKALNTMVNSVARLPLLRKLQSYVRHSNPRVRAKAAVSTSNCVSKMEVNEMEEFGMILL 227
Query: 240 LQVAAELLSDRLPEAREAARGMVNSM 265
Q+AA+ LSD+LPEAREAAR MVNS+
Sbjct: 228 AQMAADQLSDKLPEAREAARSMVNSL 253
>AT3G01450.1 | chr3:169903-171379 REVERSE LENGTH=327
Length = 326
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 127/221 (57%), Gaps = 5/221 (2%)
Query: 43 KNDENSAPKAT-TEQAVEYVRSEDLQPVPHPKAKAAGLVAELDSKDWIRACDALNDARRL 101
K DE P+A +EY+ S+DL V A LV ELDSKDW+ CDALN RRL
Sbjct: 51 KGDEIEKPEAERVIVEIEYIESKDLNNVTQVDAVLKSLVTELDSKDWVLVCDALNTIRRL 110
Query: 102 AIHHPSLLNPILGKVMLAIVKTMKSPRSAVCKTSIMACTDVFDSFGNLLSSASDDAFDKX 161
+I H + +L KV+L IVK++K+PRSAV KT+ M D+F S+ + + D D
Sbjct: 111 SIFHKEEMLHMLEKVILFIVKSLKNPRSAVSKTACMTSADIFSSYND----HTIDQLDLL 166
Query: 162 XXXXXXKASQDKRFVXXXXXXXXXXXXXXXPPLPLLRKLKAYVHHANLRVRAKAAVAMSQ 221
K+SQDKRFV P LL KL+ ++ + N R+RAKA+ S+
Sbjct: 167 LTQLLLKSSQDKRFVCEAAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCFSR 226
Query: 222 CASRMDVATMKEFGMSAMLQVAAELLSDRLPEAREAARGMV 262
C R+ + ++E+G+ ++Q A+ LSD+LPE+REAAR ++
Sbjct: 227 CVPRLGIEGIREYGIEKLVQAASSQLSDQLPESREAARAVL 267
>AT5G14790.1 | chr5:4784058-4785508 FORWARD LENGTH=347
Length = 346
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 122/205 (59%), Gaps = 4/205 (1%)
Query: 58 VEYVRSEDLQPVPHPKAKAAGLVAELDSKDWIRACDALNDARRLAIHHPSLLNPILGKVM 117
VEY+ SE+L V A ++A L+SKDWI CDALN+ RRL+I H + +L KV+
Sbjct: 70 VEYIESENLDNVDDADAVLKSVLAGLESKDWISLCDALNNVRRLSIFHKEEMMHMLEKVI 129
Query: 118 LAIVKTMKSPRSAVCKTSIMACTDVFDSFGNLLSSASDDAFDKXXXXXXXKASQDKRFVX 177
+VK++K+PRSAVCKT+ M D+F ++ N ++ D + K+SQDKRFV
Sbjct: 130 PLVVKSLKNPRSAVCKTACMTSADIFSAYNNHIT----DLLEPLLTQLLLKSSQDKRFVC 185
Query: 178 XXXXXXXXXXXXXXPPLPLLRKLKAYVHHANLRVRAKAAVAMSQCASRMDVATMKEFGMS 237
P LL KL+ + + N R+RAKA++ S+ R+ V +KE+G+
Sbjct: 186 EAAEKALTAMTKYVSPTLLLPKLQPCLKNRNPRIRAKASLCFSRSVPRLGVEGIKEYGID 245
Query: 238 AMLQVAAELLSDRLPEAREAARGMV 262
++Q AA LSD+LPE+REAAR ++
Sbjct: 246 KLVQAAASQLSDQLPESREAARTVL 270
>AT3G18530.1 | chr3:6373535-6375050 REVERSE LENGTH=362
Length = 361
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 45 DENSAPKATTEQAV---EYVRSEDLQPVPHPKAKAAGLVAELDSKDWIRA---CD-ALND 97
DE P+A E+ + EY++S+DL V A+ ++ W CD + +
Sbjct: 53 DEIEKPEA--ERVIVELEYIKSKDLNNV----AEVDAVLKVSIVLSWYYTMLYCDFSFSL 106
Query: 98 ARRLAIHHPSLLNPILGKVMLAIVKTMKSPRSAVCKTSIMACTDVFDSFGNLLSSASDDA 157
R + H P N KV+L +VK++K+PRSAV KT+ M D+F S+ +D
Sbjct: 107 DRSSSFHFPQGRNAAFAKVILFVVKSLKNPRSAVSKTACMTSEDIFSSY-------NDHI 159
Query: 158 FDK---XXXXXXXKASQDKRFVXXXXXXXXXXXXXXXPPLPLLRKLKAYVHHANLRVRAK 214
FD+ K+SQDKRFV P LL KL+ + + + R+RAK
Sbjct: 160 FDQLDRLLTQLLLKSSQDKRFVCEAAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAK 219
Query: 215 AAVAMSQCASRMDVATMKEFGMSAMLQVAAELLSDRLPEAREAARGMV 262
A+ S C R+ + M+E+G+ Q L R+ R ++
Sbjct: 220 ASACFSGCVPRLGIEGMREYGIETNSQNLRRLHGQSSWNLRQCIRKLL 267
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.126 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,355,934
Number of extensions: 129891
Number of successful extensions: 369
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 4
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)