BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0931100 Os01g0931100|AK068780
         (488 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27730.1  | chr5:9820311-9822868 FORWARD LENGTH=473            597   e-171
AT5G47900.1  | chr5:19392408-19394963 FORWARD LENGTH=441          324   5e-89

>AT5G27730.1 | chr5:9820311-9822868 FORWARD LENGTH=473
          Length = 472

 Score =  597 bits (1538), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 277/437 (63%), Positives = 344/437 (78%)

Query: 52  RVASLDVFRGLTVALMILVDGAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPLSLK 111
           R+ASLD+FRGLTVALMILVD AGG+WP+I HAPWNGCNLADFVMPFFLFIVG++I LSLK
Sbjct: 36  RLASLDIFRGLTVALMILVDDAGGDWPMIAHAPWNGCNLADFVMPFFLFIVGVSIALSLK 95

Query: 112 RIPDXXXXXXXXXXXXXXXXFWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIALAYL 171
           RI +                FWG+LLQGG+SHAPD+L+YGVD+  +R+CGILQRIAL+YL
Sbjct: 96  RISNKFEACKKVGFRTCKLLFWGLLLQGGFSHAPDELTYGVDVTMMRFCGILQRIALSYL 155

Query: 172 VVAVLEIVTKNAKVQDQSSSGFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFRVSD 231
           VVA++EI TK++  ++ S+  FSIF+ Y+  WIVA  +LVIYL+ +YG YVPDW+F V D
Sbjct: 156 VVALVEIFTKDSHEENLSTGRFSIFKSYYWHWIVAASVLVIYLATLYGTYVPDWEFVVYD 215

Query: 232 VKNPNFGKILTVTCGTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSPHEG 291
             +  +GKIL+V+CG RGKL+PPCNAVGY+DR+VLGINHMYH PAWRR K CTDDSP+EG
Sbjct: 216 KDSVLYGKILSVSCGVRGKLNPPCNAVGYVDRQVLGINHMYHHPAWRRSKACTDDSPYEG 275

Query: 292 PFKTDSPAWCYAPFEPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIMXXXXX 351
             + D+P+WC APFEPEG+LSS+SA+LSTIIGVH+GH+++H+K H+ RLK W        
Sbjct: 276 AIRQDAPSWCRAPFEPEGILSSISAILSTIIGVHFGHIILHLKGHSARLKHWISTGLVLL 335

Query: 352 XXXXXXHFSHAIPLNKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWTGMN 411
                 HF+H +PLNKQLY+FSYICVT+GAA +VF   Y LVDIL   + F PLKW GMN
Sbjct: 336 ALGLTLHFTHLMPLNKQLYSFSYICVTSGAAALVFSSLYSLVDILEWKHMFLPLKWIGMN 395

Query: 412 AMLVYVMAAAGIFEGFLNGWYYEGTNNTLVYWVRKHVFVKVWHSTRVGILLYVLFAQILF 471
           AMLVYVM A GI   F NGWYY   +NTL+ W+R+HVF++VWHS RVG+L+YV+FA+ILF
Sbjct: 396 AMLVYVMGAEGILAAFFNGWYYRHPHNTLINWIREHVFIRVWHSRRVGVLMYVIFAEILF 455

Query: 472 WALVAGLLHRARLYWKL 488
           W LV G+ HR ++YWKL
Sbjct: 456 WGLVTGVFHRFKIYWKL 472



>AT5G47900.1 | chr5:19392408-19394963 FORWARD LENGTH=441
          Length = 440

 Score =  324 bits (831), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 176/439 (40%), Positives = 252/439 (57%), Gaps = 16/439 (3%)

Query: 12  HGAVAEEDPDRRRGDRSXXXXXXXXXXXXXXAPPPRRTSRRVASLDVFRGLTVALMILVD 71
           + A+ + D +  +                   PP +    R+ SLDVFRGLTVA MILVD
Sbjct: 8   YEAIKDNDDNDHQWREKKDIESALQISRSSSLPPDKE---RLVSLDVFRGLTVAFMILVD 64

Query: 72  GAGGEWPVIGHAPWNGCNLADFVMPFFLFIVGMAIPLSLKRIPDXXXXXXXXXXXXXXXX 131
             GG  P I H+PW+G  LADFVMPFFLFIVG+++  + K +                  
Sbjct: 65  DVGGILPSINHSPWDGVTLADFVMPFFLFIVGVSLAFAYKNLSCRFVATRKALIRSLKLL 124

Query: 132 FWGILLQGGYSHAPDDLSYGVDMKHVRWCGILQRIALAYLVVAVLEIVTKNAKVQDQSSS 191
             G+ LQGG+ H  ++L+YG+D++ +R  GILQRIA+AYLVVA+ EI  K        SS
Sbjct: 125 LLGLFLQGGFIHGLNNLTYGIDVEKIRLMGILQRIAIAYLVVALCEIWLKG---NHNVSS 181

Query: 192 GFSIFRMYFSQWIVACCILVIYLSLVYGIYVPDWDFRVSDVKNPNFGKILT------VTC 245
             S+ + Y   W+VA  I  IYLSL+YG+YVPDW++++      + G  LT      V C
Sbjct: 182 ELSMIKKYRFHWVVAFVITTIYLSLLYGLYVPDWEYQI---LKEDQGSTLTTFLNLKVKC 238

Query: 246 GTRGKLSPPCNAVGYIDRKVLGINHMYHRPAWRRHKDCTDDSPHEGPFKTDSPAWCYAPF 305
           G RG   P CNAVG +DR  LGI H+Y +P + R K C+ + P+ GP   D+P+WC APF
Sbjct: 239 GVRGHTGPGCNAVGMLDRMFLGIQHLYRKPVYARTKQCSINYPNNGPLPPDAPSWCQAPF 298

Query: 306 EPEGLLSSLSAVLSTIIGVHYGHVLVHMKSHTDRLKQWSIMXXXXXXXXXXXHFSHAIPL 365
           +PEGLLSSL A ++ ++G+HYGH+++H K H  RL QW I+                + L
Sbjct: 299 DPEGLLSSLMATVTCLVGLHYGHIIIHFKDHKKRLNQW-ILRSFCLLMLGLALNLFGMHL 357

Query: 366 NKQLYTFSYICVTAGAAGIVFCMFYFLVDILNLHYPFAPLKWTGMNAMLVYVMAAAGIFE 425
           NK LYT SY+CVT+GA+G +    Y +VD+         L+W G++A+ +YV+ A  +  
Sbjct: 358 NKPLYTLSYMCVTSGASGFLLSAIYLMVDVYGYKRASLVLEWMGIHALPIYVLIACNLVF 417

Query: 426 GFLNGWYYEGTNNTLVYWV 444
             ++G+Y++   N L++ +
Sbjct: 418 LIIHGFYWKNPINNLLHLI 436



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.143    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,348,080
Number of extensions: 411102
Number of successful extensions: 975
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 2
Length of query: 488
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 386
Effective length of database: 8,310,137
Effective search space: 3207712882
Effective search space used: 3207712882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 114 (48.5 bits)