BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0929100 Os01g0929100|AK105788
         (176 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43750.1  | chr5:17580100-17581145 REVERSE LENGTH=213          214   1e-56

>AT5G43750.1 | chr5:17580100-17581145 REVERSE LENGTH=213
          Length = 212

 Score =  214 bits (546), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 6/176 (3%)

Query: 1   RCSNSNR-----SRAGPGPLTEIEPDLNEDPIDKWRTNGVSPDDFEYGVYDGHHTYNETQ 55
           +C  S R            L++IEPD+NEDPI ++ TN +  +DF+YG YDG HTY E +
Sbjct: 33  KCGKSGRRLKLAKLVSAAGLSQIEPDINEDPIGQFETNSIEMEDFKYGYYDGAHTYYEGE 92

Query: 56  DKKG-FWEDVSEWYQEAEPPQGFQALISWLFPPAIILGMAFNVPGEYLYIGAAVFVVVFC 114
            +KG FW  +++     +   GFQ LIS +F PAI LGM F+ PGEYL+IGAA+F VVFC
Sbjct: 93  VQKGTFWGAIADDIAAVDQTNGFQGLISCMFLPAIALGMYFDAPGEYLFIGAALFTVVFC 152

Query: 115 VIEMDKPDKPHNFEPEIYMMERSARDKLIADYNTMDIWDFNEKYGELWDFTVDRRD 170
           +IEMDKPD+PHNFEP+IY +ER ARDKLI DYNTM IWDFN+KYG++WDFT+++ D
Sbjct: 153 IIEMDKPDQPHNFEPQIYKLERGARDKLINDYNTMSIWDFNDKYGDVWDFTIEKDD 208



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.139    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,596,788
Number of extensions: 204877
Number of successful extensions: 449
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)