BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0928600 Os01g0928600|J065095L19
         (115 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48780.1  | chr3:18089346-18092276 FORWARD LENGTH=490          112   5e-26
AT5G23670.1  | chr5:7981889-7985037 FORWARD LENGTH=490            111   7e-26
AT3G48790.1  | chr3:18093404-18095181 FORWARD LENGTH=351           98   7e-22

>AT3G48780.1 | chr3:18089346-18092276 FORWARD LENGTH=490
          Length = 489

 Score =  112 bits (279), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/58 (79%), Positives = 57/58 (98%)

Query: 2   GAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVS 59
           GA+K+A+IR+NSNFFR+ELQKMGFEVLGDNDSPVMP M+YNPAK+PAFSRECL++N++
Sbjct: 367 GAQKLARIRENSNFFRAELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRENLA 424



>AT5G23670.1 | chr5:7981889-7985037 FORWARD LENGTH=490
          Length = 489

 Score =  111 bits (278), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/58 (81%), Positives = 56/58 (96%)

Query: 2   GAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVS 59
           GA+K+A+IR+NSNFFR+ELQKMGFEVLGDNDSPVMP M+YNPAK+PAFSRECL+Q V+
Sbjct: 367 GAQKLARIRENSNFFRAELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQKVA 424



>AT3G48790.1 | chr3:18093404-18095181 FORWARD LENGTH=351
          Length = 350

 Score = 98.2 bits (243), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 47/92 (51%), Positives = 66/92 (71%), Gaps = 2/92 (2%)

Query: 2   GAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVSFF 61
           G  K+A+IR+NSNFFR+ELQKMGF+VLG  DSP+MP M+YNPAK+ AFSRECL++N++  
Sbjct: 224 GELKLARIRENSNFFRAELQKMGFKVLGVYDSPIMPIMLYNPAKIAAFSRECLRENLAIV 283

Query: 62  QVHHKSIKNLIKQS--CPFSKSLMQICLKIVQ 91
            V    I  L+ ++  C  +  L +  +K +Q
Sbjct: 284 VVSFPPIPLLLARARICNSASHLREDLIKALQ 315



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,465,492
Number of extensions: 89810
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 3
Length of query: 115
Length of database: 11,106,569
Length adjustment: 84
Effective length of query: 31
Effective length of database: 8,803,625
Effective search space: 272912375
Effective search space used: 272912375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 104 (44.7 bits)