BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0926700 Os01g0926700|J053083C13
(113 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61840.1 | chr5:24839365-24841703 REVERSE LENGTH=416 160 1e-40
AT1G27440.1 | chr1:9529265-9531213 REVERSE LENGTH=413 159 3e-40
AT5G22940.1 | chr5:7677197-7678892 FORWARD LENGTH=470 54 2e-08
AT2G28110.1 | chr2:11978024-11979641 REVERSE LENGTH=449 50 2e-07
>AT5G61840.1 | chr5:24839365-24841703 REVERSE LENGTH=416
Length = 415
Score = 160 bits (406), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/83 (89%), Positives = 79/83 (95%)
Query: 31 FQEEKAIGRGILPLLQRATLVQTFGQKNHVCLKDGSITIPPYAPPQKMQAHLIPPDTPRS 90
+QEEKAIGRGILPLLQRATLVQTFGQ+NHVCLK+GSIT+PPYAPPQKMQ+HLIP TPRS
Sbjct: 163 YQEEKAIGRGILPLLQRATLVQTFGQRNHVCLKEGSITVPPYAPPQKMQSHLIPEKTPRS 222
Query: 91 IFVYFRGLFYDTSNDPEGGYYAR 113
IFVYFRGLFYD NDPEGGYYAR
Sbjct: 223 IFVYFRGLFYDVGNDPEGGYYAR 245
>AT1G27440.1 | chr1:9529265-9531213 REVERSE LENGTH=413
Length = 412
Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 73/83 (87%), Positives = 78/83 (93%)
Query: 31 FQEEKAIGRGILPLLQRATLVQTFGQKNHVCLKDGSITIPPYAPPQKMQAHLIPPDTPRS 90
+QEEKAI RGILPLLQRATLVQTFGQ+NHVCL +GSITIPP+APPQKMQAH IPPD PRS
Sbjct: 160 YQEEKAIERGILPLLQRATLVQTFGQRNHVCLDEGSITIPPFAPPQKMQAHFIPPDIPRS 219
Query: 91 IFVYFRGLFYDTSNDPEGGYYAR 113
IFVYFRGLFYD +NDPEGGYYAR
Sbjct: 220 IFVYFRGLFYDVNNDPEGGYYAR 242
>AT5G22940.1 | chr5:7677197-7678892 FORWARD LENGTH=470
Length = 469
Score = 53.5 bits (127), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 33 EEKAIGRGILPLLQRATLVQTFGQK-NHVCLKDGSITIPPYAPPQKMQAHL--IPPDTPR 89
E+ AI GI ++R+ ++QTFG K H C + + IPPY PP+ +Q + P + R
Sbjct: 226 EDMAIEEGIPKFMKRSIILQTFGVKYKHPCQEVEHVVIPPYIPPESVQKAIEKAPVNGRR 285
Query: 90 SIFVYFRGLFYDTSNDPEGGYYAR 113
I+ +FRG + G +Y++
Sbjct: 286 DIWAFFRGKMEVNPKNISGRFYSK 309
>AT2G28110.1 | chr2:11978024-11979641 REVERSE LENGTH=449
Length = 448
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 33 EEKAIGRGILPLLQRATLVQTFGQK-NHVCLKDGSITIPPYAPPQKMQA--HLIPPDTPR 89
E++AI G+ L+ + ++QTFG NH C + ++ IPPY P+ + IP R
Sbjct: 212 EDRAIADGVPIFLRNSIILQTFGVTFNHPCQEVENVVIPPYISPESLHKTQKNIPVTKER 271
Query: 90 SIFVYFRGLFYDTSNDPEGGYYAR 113
I+V+FRG + G +Y++
Sbjct: 272 DIWVFFRGKMELHPKNISGRFYSK 295
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.142 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,718,650
Number of extensions: 101648
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 4
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)