BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0926300 Os01g0926300|AK067632
         (432 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13420.1  | chr5:4302080-4304212 REVERSE LENGTH=439            634   0.0  

>AT5G13420.1 | chr5:4302080-4304212 REVERSE LENGTH=439
          Length = 438

 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/373 (83%), Positives = 344/373 (92%)

Query: 55  ASAKEGNGAPTKRTTLHDLYDLQGQSPWYDNLCRPVTDLLPLIGSGVRGVTSNPSIFQKA 114
            S   GNG   KRTTLHDLY+ +GQSPWYDNLCRPVTDLLPLI  GVRGVTSNP+IFQKA
Sbjct: 62  CSVSGGNGTAGKRTTLHDLYEKEGQSPWYDNLCRPVTDLLPLIARGVRGVTSNPAIFQKA 121

Query: 115 ISTSNAYDDQFKQLILAGKDAESAYWELVIKDIQDACKLFEPIYDQTDGADGYVSVEVSP 174
           ISTSNAY+DQF+ L+ +GKD ESAYWELV+KDIQDACKLFEPIYDQT+GADGYVSVEVSP
Sbjct: 122 ISTSNAYNDQFRTLVESGKDIESAYWELVVKDIQDACKLFEPIYDQTEGADGYVSVEVSP 181

Query: 175 RLANDTQGTVEAAKWLHKVVDRPNVYIKIPATAECVPSIKEVIANGISVNVTLIFSIARY 234
           RLA+DTQGTVEAAK+L KVV+R NVYIKIPATA C+PSI++VIA GISVNVTLIFSIARY
Sbjct: 182 RLADDTQGTVEAAKYLSKVVNRRNVYIKIPATAPCIPSIRDVIAAGISVNVTLIFSIARY 241

Query: 235 EAVIDAYIDGLEASGLSDLSRVTSVASFFVSRVDTLIDKMLEKIGTPEALALRGKAAVAQ 294
           EAVIDAY+DGLEASGL DLSRVTSVASFFVSRVDTL+DKMLE+IGTPEAL LRGKAAVAQ
Sbjct: 242 EAVIDAYLDGLEASGLDDLSRVTSVASFFVSRVDTLMDKMLEQIGTPEALDLRGKAAVAQ 301

Query: 295 AKLANQLYQKKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYPDTLYVDPLIGPDTVSTM 354
           A LA +LYQ+KFSGPRWEALVKKGAKKQRLLWASTSVKNPAY DTLYV PLIGPDTVSTM
Sbjct: 302 AALAYKLYQQKFSGPRWEALVKKGAKKQRLLWASTSVKNPAYSDTLYVAPLIGPDTVSTM 361

Query: 355 PDQALLAFIDHGTVSRTIDANVSDAEGVYSALEKLGIDWDEVGKQLELEGVDSFKKAFDS 414
           PDQAL AF DHG V RTIDANVS+AEG+YSALEKLGIDW++VG+QLE EGVDSFKK+F+S
Sbjct: 362 PDQALEAFADHGIVKRTIDANVSEAEGIYSALEKLGIDWNKVGEQLEDEGVDSFKKSFES 421

Query: 415 LLGSLEEKGNSLK 427
           LLG+L++K N+LK
Sbjct: 422 LLGTLQDKANTLK 434



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,388,144
Number of extensions: 344860
Number of successful extensions: 958
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 331
Effective length of database: 8,337,553
Effective search space: 2759730043
Effective search space used: 2759730043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)