BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0919700 Os01g0919700|AK059028
(379 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12830.1 | chr4:7531189-7533327 FORWARD LENGTH=394 504 e-143
AT1G52510.1 | chr1:19563039-19565260 REVERSE LENGTH=381 156 1e-38
AT5G19850.1 | chr5:6709976-6711662 REVERSE LENGTH=360 60 2e-09
AT5G17780.2 | chr5:5867429-5868976 REVERSE LENGTH=420 52 4e-07
AT4G15955.3 | chr4:9043872-9045544 REVERSE LENGTH=305 48 8e-06
>AT4G12830.1 | chr4:7531189-7533327 FORWARD LENGTH=394
Length = 393
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/344 (69%), Positives = 281/344 (81%)
Query: 35 ARPNDEDYYLIDAPESIGDGFSFSGGKYTDGPSKSDEWFAQGRMVKAHPVYGNKGKAKDP 94
+ N++D YLIDAP S+GDGFSFSGGKY+D PS SDEW QG+ VKAH V G+ +AKDP
Sbjct: 45 CKSNNKDDYLIDAPVSVGDGFSFSGGKYSDQPSPSDEWLKQGKWVKAHRVGGSGVEAKDP 104
Query: 95 IFGLTMGAESQSSNDVFRWFCVEAGSSSNPPVLFIHGFPSQAYSYRNVLPVVSDNYHAIA 154
IFGLTMGA SQ+S D+FRWF VE+GS +PPV+ IHGFPSQAYSYR +PV+S NY AIA
Sbjct: 105 IFGLTMGASSQASKDLFRWFSVESGSVDSPPVILIHGFPSQAYSYRKTIPVLSKNYRAIA 164
Query: 155 FDWLGFGFSDKPQPDYGFDYTLDEYTSSLESLINAVAPDKLSIVVQGYFAPIVIKYANEH 214
FDWLGFGFSDKPQ YGF+YT+DE+ SSLES I+ V K+S+VVQGYF+ V+KYA
Sbjct: 165 FDWLGFGFSDKPQAGYGFNYTMDEFVSSLESFIDEVTTSKVSLVVQGYFSAAVVKYARNR 224
Query: 215 QDKLNHLILVNPPITDKHAKLPSTLACFSNFLLGEIFSQDPLRASDKALTSSGPYMMKEE 274
DK+ +LIL+NPP+T +HAKLPSTL+ FSNFLLGEIFSQDPLRASDK LTS GPY MKE+
Sbjct: 225 PDKIKNLILLNPPLTPEHAKLPSTLSVFSNFLLGEIFSQDPLRASDKPLTSCGPYKMKED 284
Query: 275 DAMVYRRPYLVSGSSGFALNAISRAMKKDLKVYIESMRNILSSDSWKTKTTVCWGLRDRW 334
DAMVYRRPYL SGSSGFALNAISR+MKK+LK Y E MR L +WK TVCWG RDRW
Sbjct: 285 DAMVYRRPYLTSGSSGFALNAISRSMKKELKKYAEEMRTSLMDKNWKIPITVCWGQRDRW 344
Query: 335 LNYDGVEDFCGSANYKILELPMAGHHVQEDRGEELGKLVKRILS 378
L+Y+GVE+FC S+ + ++ELP AGHHVQED GEELG ++ RI+S
Sbjct: 345 LSYEGVEEFCKSSGHNLVELPNAGHHVQEDCGEELGGIISRIIS 388
>AT1G52510.1 | chr1:19563039-19565260 REVERSE LENGTH=381
Length = 380
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 143/266 (53%), Gaps = 11/266 (4%)
Query: 111 FRWFCVEAGS--SSNPPVLFIHGFPSQAYSYRNVLPVVSD-NYHAIAFDWLGFGFSDKPQ 167
RWF E GS S ++F+HG P+Q++SYR V+ +SD +H A DW+GFGFSDKPQ
Sbjct: 111 LRWFVRETGSKESRRGTIVFVHGAPTQSFSYRTVMSELSDAGFHCFAPDWIGFGFSDKPQ 170
Query: 168 PDYGFDYTLDEYTSSLESLINAV-APDKLSIVVQGYF-APIVIKYANEHQDKLNHLILVN 225
P YGF+YT EY + + L+ + +VVQG+ + +A ++ K+ L ++N
Sbjct: 171 PGYGFNYTEKEYHEAFDKLLEVLEVKSPFFLVVQGFLVGSYGLTWALKNPSKVEKLAILN 230
Query: 226 PPITDKHAKLPSTLACFSNFLLGEIFSQDPLRASDKALTSSGPYMMKEEDAMVYRRPYLV 285
P+T + +P L GE Q+ + A ++ + PY++K E A VYR PYL
Sbjct: 231 SPLT-VSSPVPGLFKQLRIPLFGEFTCQNAILA-ERFIEGGSPYVLKNEKADVYRLPYLS 288
Query: 286 SGSSGFALNAISRAMKKDLKVYIESMRNILSSDSWKTKTTVCWGLRDRWLNYDGVEDF-- 343
SG GFAL + A K + + + N SS SW T + WG+ D++L E+F
Sbjct: 289 SGGPGFAL--LETAKKINFGDTLSQIANGFSSGSWDKPTLLAWGIADKYLPQSIAEEFEK 346
Query: 344 CGSANYKILELPMAGHHVQEDRGEEL 369
N K+ + AGH QED E++
Sbjct: 347 QNPQNVKLRLIEGAGHLPQEDWPEKV 372
>AT5G19850.1 | chr5:6709976-6711662 REVERSE LENGTH=360
Length = 359
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 115/290 (39%), Gaps = 48/290 (16%)
Query: 117 EAGSSSNPPVLFIHGFPSQAYSYRNVLPVVSDNYHAIAFDWLGFGFSDKPQP-DYGFD-- 173
+ +S P ++ +HGF + + +R P++ + + D +G+G+SDKP P ++G +
Sbjct: 88 QCAGTSGPALVLVHGFGANSDHWRKNTPILGKTHRVYSIDLIGYGYSDKPNPREFGGEPF 147
Query: 174 YTLDEYTSSLESLINAVAPDKLSIVVQGYFAPIVIKYANEHQDKLNHLILVNPPITDKHA 233
YT + + L V D+ + + ++ A + L+L+N + H
Sbjct: 148 YTFETWGEQLNDFCLDVVKDEAFFICNSIGGLVGLQAAVSKPEICRGLMLINISLRMLHI 207
Query: 234 KLPSTLA-----CFSNFL----LGEIFSQDPLRASDKALTSSGPY----MMKEEDAMVYR 280
K + F N L +G++F + + Y + +E
Sbjct: 208 KKQPFIGRPFIKSFQNLLRNTPVGKLFFKSIAKPETVKSILCQCYHDSSQVTDELVEAIL 267
Query: 281 RPYLVSGSSGFALNAISRA---MKKDLKVYIESMRNILSSDSWKTKTTVCWGLRDRW--- 334
RP L G+ L I + + +DL + K + WG +D W
Sbjct: 268 RPGLEPGAVDVFLEFICYSGGPLPEDLLPLV------------KCPVLIAWGEKDPWEPI 315
Query: 335 ------LNYDGVEDFCGSANYKILELPMAGHHVQEDRGEELGKLVKRILS 378
N+D VEDF + LP AGH Q+++ E + L++ ++
Sbjct: 316 ELGRAYSNFDAVEDF--------VVLPDAGHCPQDEKPEMVNPLIESFVA 357
>AT5G17780.2 | chr5:5867429-5868976 REVERSE LENGTH=420
Length = 419
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 126 VLFIHGFPSQAYSYRNVL--PVVSDNYHAIAFDWLGFGFSDKPQPDYGFDYTLDEYTSSL 183
V+FIHGF ++ + + + D+Y +A D LGFG S KP+ YTL ++ ++
Sbjct: 152 VIFIHGFMGSSHFWTETVFEHIQKDDYRLLAIDLLGFGESPKPRDSL---YTLKDHVDTI 208
Query: 184 E-SLINAVAPDKLSIVVQGYFAPIVIKYANEHQDKLNHLILVNPP 227
E S+I D +V I + A +H + + + LV PP
Sbjct: 209 ERSVIKPYQLDSFHVVAHSMGCLIALALAAKHSNIVKSVTLVAPP 253
>AT4G15955.3 | chr4:9043872-9045544 REVERSE LENGTH=305
Length = 304
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 97 GLTMGAESQSSNDVFRWFCVEAGSSSNPPV-LFIHGFPSQAYSYRNVLPVVSD-NYHAIA 154
G+TM +S + V + PPV LF+HGFP Y++R+ + +S Y IA
Sbjct: 14 GITMHVAEKSPS-------VAGNGAIRPPVILFLHGFPELWYTWRHQMVALSSLGYRTIA 66
Query: 155 FDWLGFGFSDKPQPDYGFDYTLDEYTS-----SLESLINAVAPDKLSIVVQGY 202
D G+G +D P+ ++D YTS L LI+AV D+ + V G+
Sbjct: 67 PDLRGYGDTDAPE-------SVDAYTSLHVVGDLIGLIDAVVGDREKVFVVGH 112
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,461,833
Number of extensions: 377164
Number of successful extensions: 879
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 8
Length of query: 379
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 279
Effective length of database: 8,364,969
Effective search space: 2333826351
Effective search space used: 2333826351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)