BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0918500 Os01g0918500|AK072446
         (504 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64930.1  | chr5:25945885-25948321 REVERSE LENGTH=565          266   2e-71

>AT5G64930.1 | chr5:25945885-25948321 REVERSE LENGTH=565
          Length = 564

 Score =  266 bits (679), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 156/449 (34%), Positives = 223/449 (49%), Gaps = 36/449 (8%)

Query: 70  GGAVQEDLALPLGMSFAAVLAQVINTKNISGQRLHPD------------FLSKIYGDSSN 117
           G    E LA PLG S AA    VI  KN +GQ ++ D             L+ +YG+   
Sbjct: 108 GERQAEKLAKPLGFSLAAFANMVIARKNAAGQNVYVDDLVEIFATLVEESLANVYGNKLG 167

Query: 118 SFIKNFEKSFSSTFRTLHLVNEIPVN-------------ERSHIPECSFKHXXXXXXXXX 164
           SF  NFE++FSST + L L NE                 +RS I  CS            
Sbjct: 168 SFATNFEQTFSSTLKILKLTNECANPHQSNNNDGGSCNLDRSTIDGCSDTELFERETSSA 227

Query: 165 XXXXXQNQTNRIEHDLVNTVESQLVLFASDNQQLTHL--RHSRSSPEADNRILNAIDRSN 222
                  Q +     L+N    +L LF  +  QL+ +  R S  +   D R L    R+N
Sbjct: 228 TSAYEVMQGSATATSLMN----ELALF-EETLQLSCVPPRSSAMALTTDERFLKEQTRAN 282

Query: 223 ELKEFEIGLTMRXXXXXXXXXXXXXXXXMLEKIKLSFGFQKASFKGEKFKTRMQETRDAE 282
           +LK  EIGL +R                 L K  L     KA+F+ EKFKT +++TR  E
Sbjct: 283 DLKTVEIGLQIRELRCKETALGLKFESNNLGKAALELDVSKAAFRAEKFKTELEDTRKEE 342

Query: 283 ILRTLIDFLVSAVIVMSACFGYGTYIYSYQRITDVTSACSATSKGSKSWWMPNSVSNFSS 342
           ++  ++D+L+ +V  M A    G Y +S +RI D TS C  + + S SWW+P  VS+ +S
Sbjct: 343 MVTRIMDWLLVSVFSMLASMVLGVYNFSIKRIEDATSVCDQSEEKSSSWWVPKQVSSINS 402

Query: 343 GFLFLRCHVIAVTRMCFGILMILAIAWLAFQRSSTTGSNMPITFNLILLGIICGFAGRFC 402
           GF    C V    ++ FG+LMI+   +   +RSS T   MPI+F ++ LGI CG +G+ C
Sbjct: 403 GFNTFICRVRVWVQIFFGVLMIIVFTYFLNKRSSGTKQTMPISFIVLFLGIFCGVSGKLC 462

Query: 403 TNTLGGDGNTWLMYWEVLCSIHLLGNLFPSLLYHVLHGPISVSHREQV----VWLPYWVR 458
            +TLGGDG  WL+ WEV C +  + N+F   LY ++ GPI+V+   +        PYW R
Sbjct: 463 VDTLGGDGKLWLIVWEVFCLLQFVANVFTLALYGLMFGPINVTQETRSNRCNSMFPYWAR 522

Query: 459 RCLFYAAVGLILPALTGLLPFASLSDWKD 487
           R + Y  +  +LP + GLLPFA+  +W+D
Sbjct: 523 RSVVYVVILFVLPVINGLLPFATFGEWRD 551



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,088,044
Number of extensions: 359072
Number of successful extensions: 1093
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 401
Effective length of database: 8,282,721
Effective search space: 3321371121
Effective search space used: 3321371121
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 114 (48.5 bits)