BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0917300 Os01g0917300|J065179H19
         (125 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65295.1  | chr1:24251567-24252054 FORWARD LENGTH=116           96   6e-21
AT5G01015.1  | chr5:5335-5769 REVERSE LENGTH=105                   59   5e-10

>AT1G65295.1 | chr1:24251567-24252054 FORWARD LENGTH=116
          Length = 115

 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 11/84 (13%)

Query: 42  MVPVVEGGGGFSAMVLNETRRRLGSFQLCAPCTCCXXXXXXXXXXXXXCILSPCCYAINC 101
           MVP+    G    MV+NETRR+LGSFQ+C+ CTCC             C+ SPCCYAINC
Sbjct: 43  MVPL----GEEKFMVMNETRRKLGSFQICSVCTCCGGAKGL-------CLPSPCCYAINC 91

Query: 102 NIPNRPFGFCSFTPKSCDCLGCNL 125
           NIPNRPFG+CSFTPK+C+C GC++
Sbjct: 92  NIPNRPFGYCSFTPKTCNCFGCHI 115



>AT5G01015.1 | chr5:5335-5769 REVERSE LENGTH=105
          Length = 104

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 26  ATSQVGGAGEEVEVARMVPVVEGGGGFSAMVLNETRRRLGS-FQLCAPCTCCXXXXXXXX 84
            T+   G G  +    M PV  G      M     RR+L +  +LC  C CC        
Sbjct: 19  VTTNGQGDGTGLNAEEMWPVEVG------MEYRVWRRKLMTPLELCLECKCCSSTT---- 68

Query: 85  XXXXXCILSPCCYAINCNIPNRPFGFCSFTPKSCDCLGCNL 125
                C   PCC+ INC +PN+PFG C+F PKSC C  C++
Sbjct: 69  -----CATMPCCFGINCQLPNKPFGVCAFVPKSCHCNSCSI 104



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.141    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,118,436
Number of extensions: 63987
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 125
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 39
Effective length of database: 8,748,793
Effective search space: 341202927
Effective search space used: 341202927
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)