BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0917200 Os01g0917200|J013123G07
         (469 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07210.1  | chr3:2293000-2295119 REVERSE LENGTH=548            340   1e-93

>AT3G07210.1 | chr3:2293000-2295119 REVERSE LENGTH=548
          Length = 547

 Score =  340 bits (872), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 217/487 (44%), Positives = 270/487 (55%), Gaps = 43/487 (8%)

Query: 3   IYLFRFFITSSILDLTIVGLDPAENETTLQAQQ---PHYLKTCCKPSLDHGSVVYLLGHT 59
           ++  RFFITSS++DLTIVGLD  + +++ Q+Q    PHYLKTC KP+LD GSVVYLLG+ 
Sbjct: 84  LFPHRFFITSSVIDLTIVGLDLVDGDSSSQSQLQQQPHYLKTCSKPNLDLGSVVYLLGYA 143

Query: 60  GKKELVIGEGKVVIGTDNLLKLSTDGVTWCPGSAGFDAQGNLAFMICDPMKLAXXXXXXX 119
            + EL IGEGK+V+ TDNL+KLSTD + W PGSAGFD QGNLAFMICDP KL+       
Sbjct: 144 NQNELKIGEGKLVVATDNLIKLSTDEMIWSPGSAGFDVQGNLAFMICDPRKLSTSPTSTS 203

Query: 120 XXXXXXXXXXXKKDHPMQFGVPISVVCDWLYQHWQGNLDE-VSKPKLPLVRLMXXXXXXX 178
                       K   MQFG+PI V+CDWL QHW+G+LDE  +KPKLPL+RLM       
Sbjct: 204 SSSSSSLKKDNNKTLMMQFGIPIPVICDWLNQHWEGSLDEHTTKPKLPLIRLMSSGQKSE 263

Query: 179 X--XXXXXXXVFKPADDENDDTSVSSQVTSKPKHQQAS--GNSANARISHDANPLVDLRA 234
                     VFKP +D  D  + SS  T    H  +S          +   NP V    
Sbjct: 264 RSCTSFTMRRVFKP-NDSADVGTPSSSNTRDQTHPSSSIAAEEEKEEETSKTNPQVCGTT 322

Query: 235 NNEQGVSTPEIYESPRQSSCQGQKDAGSVQLLDINFPPSAPKTIFLPLPLKQMLSDENNA 294
            + QG+ TPEIYESP+ +S   + +   V LLDINFPP  PK I     L  + S+    
Sbjct: 323 THAQGIPTPEIYESPKLTSGPLRNETAQVHLLDINFPPRIPKAITFHPELNSLQSNHIVE 382

Query: 295 DTSKPRNQSRDNGFPSGIIWHRNCEALSRDPPVAPLQDDCXXXXXXXXXPVELLEYRNED 354
           +       S      +G +     E +S  PP A                     Y   +
Sbjct: 383 EAEIVSEGSDAQIASTGSVNGALSEVISSSPPAA-------------------AHYVYNN 423

Query: 355 H-FSSEEETMYSAETMESRNIPSPREK------HVGRSQSCVTYRRWSSPRMSTIQNG-- 405
           H +SSEEETMYSAET ESRN P+P  K       VGRSQSCV+  RW +P+ S   NG  
Sbjct: 424 HGYSSEEETMYSAETAESRNYPTPPRKSEFHHERVGRSQSCVSSSRWGTPQKSL--NGRR 481

Query: 406 -TLRKQHTLVPVRKSHSQNTSLPQRSHDYLSPTVSSAMKKR-NSMEQQ-LPTKPRRSIAQ 462
             L KQ + V  +K HSQ  ++ QRS+DY SPTVSS MKKR NS EQQ +   PR     
Sbjct: 482 EMLEKQRSFVHGKKMHSQG-AMSQRSNDYYSPTVSSIMKKRINSSEQQIIKPVPRPRAVS 540

Query: 463 TSPKWMF 469
           +SP+W F
Sbjct: 541 SSPRWAF 547



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,305,514
Number of extensions: 433725
Number of successful extensions: 1065
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1056
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 367
Effective length of database: 8,310,137
Effective search space: 3049820279
Effective search space used: 3049820279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)