BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0917100 Os01g0917100|AK107234
         (220 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07250.1  | chr3:2300579-2308305 REVERSE LENGTH=1295            50   1e-06

>AT3G07250.1 | chr3:2300579-2308305 REVERSE LENGTH=1295
          Length = 1294

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 27/86 (31%)

Query: 125 ITATGEGPGGRTVAGFRCRRLTSTRTLVDGEDXXXXXXXXXXXXXLVMCSCHGAPFTHAE 184
           +T+TG GP G+TV GF  R   S  +++                    C CHG  F+ AE
Sbjct: 223 VTSTGNGPEGKTVNGFLYRYSKSEISII--------------------CVCHGTSFSPAE 262

Query: 185 FLLHAGGTDLG---RNVTGYPWLGDE 207
           F++HAGGT++    R++T    +GDE
Sbjct: 263 FIVHAGGTNVSHPLRHIT----VGDE 284



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,468,635
Number of extensions: 102670
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)