BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0912700 Os01g0912700|AK068528
         (312 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65230.1  | chr1:24229167-24230764 FORWARD LENGTH=287          330   5e-91

>AT1G65230.1 | chr1:24229167-24230764 FORWARD LENGTH=287
          Length = 286

 Score =  330 bits (847), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 167/282 (59%), Positives = 206/282 (73%), Gaps = 17/282 (6%)

Query: 37  GFLSRRH------APALQRRLAPLHVVDDSKEVETAAGDGAEERSQTDKLVDGMDFGELC 90
            FL RR       +  +  RL    V++DS   E +      ++S+ DKLVD +DFGELC
Sbjct: 16  AFLRRRFFRHSWLSSKIHHRLP--QVMNDSTRTEVSI-----DKSEVDKLVDKIDFGELC 68

Query: 91  NDFECISSPYVEATARQLARDILDLRDDNRAFTCYAVSVKYKDPVRTFVGREKYKRPLWI 150
           NDFEC SSP VE+TARQL RDIL++R+ NRAF CYAVSVKYKDPVR+F GREKYKRP+WI
Sbjct: 69  NDFECTSSPQVESTARQLVRDILEIREGNRAFACYAVSVKYKDPVRSFTGREKYKRPMWI 128

Query: 151 TKALENPTVTVQEMSMQSTSNLTIKWTFRGKPKNPIFATIGGDLIVSVTSQFVLNQISGQ 210
           T  LENPTVTVQEM M STS L IKWT +GKPK+ I A + GDLIV V S+F LNQISGQ
Sbjct: 129 TSGLENPTVTVQEMVMLSTSVLRIKWTVKGKPKS-ILAAVSGDLIVKVKSEFTLNQISGQ 187

Query: 211 VLEQVDSWDLSASSPPAQAYFWLSRRAFSTVEAGKDTIEAAKGTASRLSSKKDENLEVYP 270
           V E  +SWDLS+SSP AQAYFW SRR F+  E+ KD  +  K   + L+++K E+ ++Y 
Sbjct: 188 VFEHEESWDLSSSSPIAQAYFWTSRRLFAASESAKDVADVTKDLTANLTTRK-EDTDIYR 246

Query: 271 DPSGDPTKFFQRPDDGLNQDVYQIALFLAVLYFIVQFLRTTL 312
           DP+ DP KFFQR D+   +DVYQIALFLA++YF+VQFL+ T+
Sbjct: 247 DPT-DPNKFFQR-DNSFERDVYQIALFLAIVYFVVQFLKNTI 286



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,967,367
Number of extensions: 236441
Number of successful extensions: 589
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 587
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 214
Effective length of database: 8,419,801
Effective search space: 1801837414
Effective search space used: 1801837414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)