BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0911800 Os01g0911800|AK065451
         (760 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23980.1  | chr3:8662818-8667440 REVERSE LENGTH=715            363   e-100

>AT3G23980.1 | chr3:8662818-8667440 REVERSE LENGTH=715
          Length = 714

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/480 (45%), Positives = 304/480 (63%), Gaps = 20/480 (4%)

Query: 289 PFMSSGYPTTYNRSRPSFLDSIGVQRAPTTEVPYVE-PAKASKPFGNSNSESSFFQPPNQ 347
           P  S+    T  RSRPSFLDS+ + RAP T+  + E  A      G+  S S  F P   
Sbjct: 247 PLNSAKSEATVKRSRPSFLDSLNISRAPETQYQHPEIQADLVTSSGSQLSGSDGFGP--S 304

Query: 348 QSAGSNDVDG--SLKSGRQEYNNEKGSYGNSIRTDSFPSKDERNLHHSTQMFQNFTIPGK 405
             +G  D +G  SL SG  +Y N    + +S+    +P+      +     F +F++P +
Sbjct: 305 YISGRRDSNGPSSLTSGASDYPNPFEKFRSSL----YPAA-----NGVMPGFTDFSMPKQ 355

Query: 406 DDDFAALEQLIEDLTKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTSDM 465
           +DDF ALEQ IEDLT+EKF+LQR L+ S+ LA++LA++NS++TD +NQQ  +++ L  DM
Sbjct: 356 NDDFTALEQHIEDLTQEKFSLQRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDM 415

Query: 466 ERLQNEIQAQLLALESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLE 525
           ERL  +IQAQ+  LESVR EYANAQLECNAADER+++LA+EVI LEDKALRLRS+ELKLE
Sbjct: 416 ERLYQQIQAQMGELESVRVEYANAQLECNAADERSQILASEVISLEDKALRLRSNELKLE 475

Query: 526 KEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIEKP 585
           +E+E   +E+ SY++K+ SLEK+RQ LQST++ALQEEKK+L + ++  S   K   + K 
Sbjct: 476 RELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLSKN 535

Query: 586 SADKRDASTAXXXXXXXXXXXXXXXXXAIDT--VEDGETSVSRSNNVADFTYLEEVSSSI 643
           S  +++ ST+                    T  +E   ++ +        T LE  S S+
Sbjct: 536 STSRKNVSTSTEGLAISDTTPESSNQETDSTTLLESDSSNTAIIPETRQLT-LEGFSLSV 594

Query: 644 PHDQLRMIDNINSLMSXXXXXXXXXXXXXXIESSNCSKLKELNKDLTQKLEIQTHRLELL 703
           P DQ+R+I NIN+L++               E S  + ++ELNK+L++KLE QT RLEL+
Sbjct: 595 PADQMRVIHNINTLIAELAIEKEELVQALSSELSRSAHVQELNKELSRKLEAQTQRLELV 654

Query: 704 SSQRMANENVLP--KPIDTRSINDATLYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 760
           ++Q+MA +NV P  +  DT  + + T  ADEGDEVVERVLGWIMK+FPGGP KRRTSKLL
Sbjct: 655 TAQKMAIDNVSPEKQQPDTHVVQERTPIADEGDEVVERVLGWIMKMFPGGPSKRRTSKLL 714



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.125    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,786,851
Number of extensions: 546490
Number of successful extensions: 2487
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2570
Number of HSP's successfully gapped: 1
Length of query: 760
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 654
Effective length of database: 8,200,473
Effective search space: 5363109342
Effective search space used: 5363109342
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 116 (49.3 bits)