BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0908200 Os01g0908200|AK067269
(347 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G48360.1 | chr3:17908482-17910471 REVERSE LENGTH=365 253 1e-67
AT5G63160.1 | chr5:25333485-25335399 REVERSE LENGTH=366 249 2e-66
AT1G05690.1 | chr1:1707809-1709132 FORWARD LENGTH=365 172 2e-43
AT5G67480.2 | chr5:26931055-26932529 REVERSE LENGTH=384 161 6e-40
AT4G37610.1 | chr4:17670606-17671992 REVERSE LENGTH=369 154 8e-38
AT4G08455.1 | chr4:5375891-5376922 FORWARD LENGTH=244 59 4e-09
>AT3G48360.1 | chr3:17908482-17910471 REVERSE LENGTH=365
Length = 364
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/339 (42%), Positives = 192/339 (56%), Gaps = 28/339 (8%)
Query: 20 ITSSGRRRIPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAA 79
I +S RRIPAHS VLASASPVL +I+++ +++ I GV DA +
Sbjct: 38 IVTSDNRRIPAHSGVLASASPVLMNIMKKPMRRYRGCGSKRVIK------ILGVPCDAVS 91
Query: 80 AFVRLLYAGSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRCEGAIGSRLTAESVVDTMQL 139
F++ LY+ S ++E E+ +L L+H Y V LK+RC + RLT E+VVD +QL
Sbjct: 92 VFIKFLYSSSLTEDEM--ERYGIHLLALSHVYMVTQLKQRCSKGVVQRLTTENVVDVLQL 149
Query: 140 AALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQRLHDADLXXXXXXX 199
A LCDAP + LR RL+ +FK VE+TE W+F+QE+DP+LELDILQ + DA+
Sbjct: 150 ARLCDAPDVCLRSMRLIHSQFKTVEQTEGWKFIQEHDPFLELDILQFIDDAESRKKRRRR 209
Query: 200 XXAEQGVYVELSEAMDCLSHICTEGCTEVGPVGRXXXXXXXXXXX--------XXCRGLQ 251
EQ +Y++LSEAM+C+ HICT+GCT VGP C GLQ
Sbjct: 210 HRKEQDLYMQLSEAMECIEHICTQGCTLVGPSNVVDNNKKSMTAEKSEPCKAFSTCYGLQ 269
Query: 252 LLIRHFSRCHRTS----CPRCQRMWQLLRLHAALCDLPDGHCNTPLCMQFRRXXXXXXXX 307
LLIRHF+ C R + C RC+RM QL RLH+ +CD PD C PLC QFR+
Sbjct: 270 LLIRHFAVCKRRNNDKGCLRCKRMLQLFRLHSLICDQPDS-CRVPLCRQFRK-------R 321
Query: 308 XXXXXXXXXXXXWGLLVKKVRVARAMSSLGKRRQMSCSQ 346
W LLV +V A+AM+SL + ++ C Q
Sbjct: 322 GEQDKKMGEDTKWKLLVTRVVSAKAMTSLCQSKKNKCEQ 360
>AT5G63160.1 | chr5:25333485-25335399 REVERSE LENGTH=366
Length = 365
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 183/324 (56%), Gaps = 27/324 (8%)
Query: 20 ITSSGRRRIPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAA 79
I +SGRR IPAHS +LAS SPVL +I+++ K I GV DA +
Sbjct: 29 IITSGRRSIPAHSGILASVSPVLTNIIEKPRKIHGGSSKKVIK-------ILGVPCDAVS 81
Query: 80 AFVRLLYAGSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRCEGAIGSRLTAESVVDTMQL 139
FVR LY+ S + E EK +L L+H Y V LK+RC +G R+TAE+VVD +QL
Sbjct: 82 VFVRFLYSPSVTENEM--EKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQL 139
Query: 140 AALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQRLHDADLXXXXXXX 199
A LCDAP L L+C R + +FK VE+TE W+FLQE+DP+LELDILQ + DA+
Sbjct: 140 ARLCDAPDLCLKCMRFIHYKFKTVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRR 199
Query: 200 XXAEQGVYVELSEAMDCLSHICTEGCTEVGPVGRXXXXXXXX------XXXXXCRGLQLL 253
EQ +Y++LSEAM+C+ HICTEGCT VGP C GLQLL
Sbjct: 200 HRREQNLYLQLSEAMECIEHICTEGCTLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLL 259
Query: 254 IRHFSRCHR----TSCPRCQRMWQLLRLHAALCDLPDGHCNTPLCMQFRRXXXXXXXXXX 309
IRHF+ C + C RC+RM QLLRLH+++CD + C PLC Q++
Sbjct: 260 IRHFAVCKKRVDGKGCVRCKRMIQLLRLHSSICDQSES-CRVPLCRQYKN-------RGE 311
Query: 310 XXXXXXXXXXWGLLVKKVRVARAM 333
W +LV++V A+AM
Sbjct: 312 KDKKMVEDTKWKVLVRRVASAKAM 335
>AT1G05690.1 | chr1:1707809-1709132 FORWARD LENGTH=365
Length = 364
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 162/320 (50%), Gaps = 25/320 (7%)
Query: 20 ITSSGRRRIPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAA 79
+ + + PAHS+VLA+ASPV+ ++L + K I GV +A
Sbjct: 58 VETDNKSHFPAHSSVLAAASPVIATLLNQSRDKNGNTYLK----------IHGVPCEAVY 107
Query: 80 AFVRLLYAGSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRCEGAIGSR-LTAESVVDTMQ 138
F+R LY SS EEE +K +LVL+H Y VP LKR C + + E+V+D +Q
Sbjct: 108 MFIRFLY--SSCYEEEEMKKFVLHLLVLSHCYSVPSLKRLCVEILDQGWINKENVIDVLQ 165
Query: 139 LAALCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQRLHDADLXXXXXX 198
LA CD ++ C ++ K+FK+V TE W+ ++ ++P LE ++++ + ++D
Sbjct: 166 LARNCDVTRICFVCLSMVIKDFKSVSSTEGWKVMKRSNPLLEQELIEAVIESDSRKQERR 225
Query: 199 XXXAEQGVYVELSEAMDCLSHICTEGCTEVGPVGRXXXXXXXXXXXXXCRGLQLLIRHFS 258
E+ VY++L EAM+ L HIC EGC +GP + C+GL+ +RHF
Sbjct: 226 RKLEEREVYLQLYEAMEALVHICREGCGTIGPRDKALKGSHTVCKFPACKGLEGALRHFL 285
Query: 259 RCH-RTSCPRCQRMWQLLRLHAALCDLPDGHCNTPLCMQFRRXXXXXXXXXXXXXXXXXX 317
C R SC C+RMWQLL+LH+ +CD C LC F+
Sbjct: 286 GCKSRASCSHCKRMWQLLQLHSCICD-DSNSCKVSLCWNFKE--------KMKKLSKKEQ 336
Query: 318 XXWGLLVKKVRVARAMSSLG 337
W LLV+ + RA +SLG
Sbjct: 337 SKWRLLVEN--IIRARNSLG 354
>AT5G67480.2 | chr5:26931055-26932529 REVERSE LENGTH=384
Length = 383
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 150/304 (49%), Gaps = 25/304 (8%)
Query: 28 IPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAAAFVRLLYA 87
I AH+ +L +AS V++ +L++ + IRGV DA F+R LY+
Sbjct: 83 IYAHANILGTASTVIKGMLKQAKRHGKWHTIS----------IRGVPHDAVRVFIRFLYS 132
Query: 88 GSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRCEGAI-GSRLTAESVVDTMQLAALCDAP 146
S ++EE++E +L+L+HAY VP LKR CE + LT E+VVD QLA LCD P
Sbjct: 133 -SCYEKEEMNE-FIMHLLLLSHAYVVPQLKRVCEWHLEHGLLTTENVVDVFQLALLCDFP 190
Query: 147 QLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQRLHDADLXXXXXXXXXAEQGV 206
+L L R++ K F + TEAW ++++ P+LE ++ + +Q +
Sbjct: 191 RLSLISHRMIMKHFNELSATEAWTAMKKSHPFLEKEVRDSVIIEANTRKERMRKRNDQRI 250
Query: 207 YVELSEAMDCLSHICTEGCTEVGPVGRXXXXXXXXXXXXXCRGLQLLIRHFSRCH---RT 263
Y +L EAM+ L HIC +GC +GP + C+GL+ LIRHF+ C
Sbjct: 251 YSQLYEAMEALVHICRDGCKTIGPHDKDFKPNHATCNYEACKGLESLIRHFAGCKLRVPG 310
Query: 264 SCPRCQRMWQLLRLHAALCDLPDGHCNTPLCMQFRRXXXXXXXXXXXXXXXXXXXXWGLL 323
C C+RMWQLL LH+ +C D C PLC + W LL
Sbjct: 311 GCVHCKRMWQLLELHSRVCAGSD-QCRVPLCRNLKE--------KMEKQSKKDESRWKLL 361
Query: 324 VKKV 327
VK V
Sbjct: 362 VKNV 365
>AT4G37610.1 | chr4:17670606-17671992 REVERSE LENGTH=369
Length = 368
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 137/276 (49%), Gaps = 20/276 (7%)
Query: 28 IPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAAAFVRLLYA 87
I AHS V+ AS V+ ++++ +K I GV A F+R LY
Sbjct: 67 IYAHSNVIGMASDVIRGMMKQHKRKSHRKSIS----------ILGVPHHALRVFIRFLY- 115
Query: 88 GSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRCEGAI-GSRLTAESVVDTMQLAALCDAP 146
SS E++ E A +LVL+H Y VP LKR CE S L E+V+D QLA LCDAP
Sbjct: 116 -SSCYEKQDMEDFAIHLLVLSHVYVVPHLKRVCESEFESSLLNKENVIDVFQLALLCDAP 174
Query: 147 QLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQRLHDADLXXXXXXXXXAEQGV 206
+L L C R++ F+ V +E W+ ++E+ P L+ ++L+ + E
Sbjct: 175 RLGLLCHRMILNNFEEVSTSEGWQAMKESHPRLQKELLRSVAYELNSLKQRNRKQKEIQT 234
Query: 207 YVELSEAMDCLSHICTEGCTEVGPVGRXXXXXXXXXXXXXCRGLQLLIRHFSRCHRTSCP 266
Y +L EAM+ HIC +GC E+GP C GL+ L++H + C S P
Sbjct: 235 YTQLYEAMEAFVHICRDGCREIGPT--KTETPHMSCGFQACNGLEQLLKHLAGCKLRSIP 292
Query: 267 ----RCQRMWQLLRLHAALCDLPDGHCNTPLCMQFR 298
RC+RMWQLL LH+ +C + C PLC +
Sbjct: 293 GGCSRCKRMWQLLELHSRIC-VDSEQCKVPLCSSLK 327
>AT4G08455.1 | chr4:5375891-5376922 FORWARD LENGTH=244
Length = 243
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 22 SSGRRRIPAHSTVLASASPVLESILQRRLKKEXXXXXXXXXXXXXXXLIRGVTDDAAAAF 81
++G IPAH +VL S SPV +++L+ +++ I V+ DA F
Sbjct: 74 NAGSPPIPAHKSVLVSRSPVFKAMLENEMEESLSGTIK----------ISDVSYDALRTF 123
Query: 82 VRLLYAGSSGDEEEIDEKSAAQMLVLAHAYRVPWLKRRCEGAIGSRLTAESVVDTMQLAA 141
V LY E +DE+ A +LV++ Y+V LK CE + ++L+ ++ + T A
Sbjct: 124 VYYLYTA----EACLDEQMACDLLVMSEKYQVKHLKSYCERFLVTKLSPDNSLMTYAFAH 179
Query: 142 LCDAPQLHLRCTRLLAKEFKAVEKTEAWRFLQENDPWLELDILQ 185
+A + + + + K E + L E DP L ++I +
Sbjct: 180 QHNAKHVLDAALSQIVENMDKLTKREEYMELVEKDPRLIVEIYE 223
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,479,899
Number of extensions: 172331
Number of successful extensions: 532
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 7
Length of query: 347
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 248
Effective length of database: 8,392,385
Effective search space: 2081311480
Effective search space used: 2081311480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)