BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0907300 Os01g0907300|AK103626
         (616 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07180.1  | chr3:2282455-2285475 REVERSE LENGTH=600            516   e-146

>AT3G07180.1 | chr3:2282455-2285475 REVERSE LENGTH=600
          Length = 599

 Score =  516 bits (1328), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/584 (47%), Positives = 369/584 (63%), Gaps = 19/584 (3%)

Query: 45  RTSKPGRKRLVLTASVXXXXXXXXXXXXKSTEIHRSPLPSDAIAALSRRLHSNPPSFPCG 104
           R++KPG KRL +T+SV            KS EI+RSPLP   I +LS +L S P  FPC 
Sbjct: 22  RSTKPGLKRLFITSSVLFSFLLGVPFLWKSVEIYRSPLPFHDIDSLSDQLESTPLRFPCN 81

Query: 105 LHAVFLRSGRDPSEASVANRIEREISTQLVDLPDASTAGKISVSVTVES-AGGCSSS--- 160
            HAVF+   R     ++ ++I+  I+ QL        +   S+SVTV++    CS +   
Sbjct: 82  FHAVFV-GFRSTDPDNLRSQIQDGIN-QLTHQSSQCGSCDFSLSVTVQNREDQCSDTLAH 139

Query: 161 SKVASPWRCGAVTTADLGRG-DEVFDELLDSALXXXXXXXMRVYTVVFVDSD-----DLK 214
           S     +RCG +       G D+  DE L+           ++Y+VV V+ +     D  
Sbjct: 140 SSTTCSYRCGVIKRNGFSVGLDDTVDESLNDVFSGCSENSGKMYSVVVVNKENANGGDEV 199

Query: 215 RIVIGKHRHAWVVGKVDE---AEVVSIIGKVFVKYFMNGGVEEGEASTVKREFMPVGSDG 271
           + V+GK RHAW+VG   E    ++V+ + ++FV+ FMNGG EE    +++ EFMPVGSDG
Sbjct: 200 KAVVGKRRHAWIVGNGLEERYGDIVARVSEIFVQVFMNGGREE---DSIQGEFMPVGSDG 256

Query: 272 NIVLSFSLLNADPSDWVYDWEFENIGQRMLTPVIEALRPIANINIESQVLYHTPKSSYSY 331
            IVLSFSLLN++P DWVYDW+F+ I + +L PV +AL PIANI +ESQVLYHTPKSS+S 
Sbjct: 257 KIVLSFSLLNSNPRDWVYDWDFQRIDEALLAPVTKALAPIANITVESQVLYHTPKSSFSS 316

Query: 332 SDDKLGGNVLSVGDIPFFVNSNEWHLDTSISATGRSKVLQFVVYIPSARECPLYLQLPDG 391
            D KL   +    D+PFFVNSNEWHLDTS  A+GRSK+LQFVVYIPS +ECPL LQLP+ 
Sbjct: 317 WDKKLQSYIFRTSDLPFFVNSNEWHLDTSAGASGRSKILQFVVYIPSGKECPLLLQLPNV 376

Query: 392 ELSKTNAFISPMWGGVVIWNPPGCSFGSKPHGALDKMSSEELMETIEIFIGQLRQLFGLK 451
           E+SKTN FISPMWGGV++WNP  C   S+   + + +S ++L + +EIF+GQ RQLFG K
Sbjct: 377 EISKTNGFISPMWGGVIVWNPGNCDKDSES-PSRNTISLQDLEQIVEIFLGQFRQLFGFK 435

Query: 452 SSYHTQSMDGVTKFITSPKGFAQWELDLLYRHHACXXXXXXXXXXXXXXXXXXXXPRMIV 511
           S     +  G  K +TS +GF +WELD+L R H C                    PRMI+
Sbjct: 436 SEAKYTTGLGTYKILTSERGFTEWELDVLSRKHTCFNLHSCSTTLGSLSRLVRSLPRMII 495

Query: 512 MDEIGRQVELSLEAASLAQRNASLGISDSSAVSATRARALAEDAFFHPSVMSISYASIEH 571
            DEIG QV+ SL+AA LAQ NASLG   SSA S+  AR+LAE+AFFHPS+MS+SY S EH
Sbjct: 496 KDEIGEQVKYSLKAAKLAQSNASLGGYSSSASSSREARSLAENAFFHPSIMSVSYFSYEH 555

Query: 572 YFAIYMPFFAPVSLHVLLAVMKELKRYMVERRKYSAFLASQATS 615
            FA+Y PFF PV  HV+LA ++E KRY  E+ KY  +L  + T+
Sbjct: 556 CFAVYSPFFLPVVGHVVLAAVREWKRYKQEKAKYLTWLTRKKTT 599



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,760,868
Number of extensions: 465081
Number of successful extensions: 1105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1100
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 512
Effective length of database: 8,255,305
Effective search space: 4226716160
Effective search space used: 4226716160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)