BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0901300 Os01g0901300|AK100274
(224 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55120.1 | chr5:22369515-22371709 FORWARD LENGTH=432 292 8e-80
AT4G26850.1 | chr4:13499262-13501145 REVERSE LENGTH=443 287 3e-78
>AT5G55120.1 | chr5:22369515-22371709 FORWARD LENGTH=432
Length = 431
Score = 292 bits (748), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 134/215 (62%), Positives = 168/215 (78%)
Query: 1 VSPIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVASEAKDPFFRVGYNSLGGFATINHLH 60
VSPI Y HVLLIPR+ DCLPQR+D +S LLA+ +A+EA +P+FR+GYNSLG FATINHLH
Sbjct: 176 VSPIEYGHVLLIPRVLDCLPQRIDHKSLLLALQMAAEADNPYFRLGYNSLGAFATINHLH 235
Query: 61 FQAYYLKVQYPVEKALTEKLTTLGNGVSIIQLVQYPVSGFVFEGGACLEDLSDVVSKVCI 120
FQAYYL +Q+P+EKA + K+TT NGV I +L+ YPV G + EGG ++DL+D VS +
Sbjct: 236 FQAYYLAMQFPIEKASSLKITTTNNGVKISKLLNYPVRGLLVEGGNTIKDLADTVSDASV 295
Query: 121 FLQENNKPFNALISESGKRVFLLPQCYAEKQALGRVSQEFLDMRINPAVWELSGHLVLKR 180
LQ NN PFN LIS+SGKR+FLLPQCYAEKQALG VS LD ++NPAVWE+SGH+VLKR
Sbjct: 296 CLQNNNIPFNILISDSGKRIFLLPQCYAEKQALGEVSSTLLDTQVNPAVWEMSGHMVLKR 355
Query: 181 RKDYDEASEATICRFLVEASLSESEFQELKSCILE 215
++DY+ ASE R L E SLSE F+E+ + I +
Sbjct: 356 KEDYEGASEEKAWRLLAEVSLSEERFREVNTMIFD 390
>AT4G26850.1 | chr4:13499262-13501145 REVERSE LENGTH=443
Length = 442
Score = 287 bits (735), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 133/224 (59%), Positives = 175/224 (78%)
Query: 1 VSPIGYCHVLLIPRIQDCLPQRVDKESFLLAMYVASEAKDPFFRVGYNSLGGFATINHLH 60
VSPI Y HVLLIPR+ DCLPQR+D +S LLA+++A+EA +P+FR+GYNSLG FATINHLH
Sbjct: 179 VSPIEYGHVLLIPRVLDCLPQRIDHKSLLLAVHMAAEAANPYFRLGYNSLGAFATINHLH 238
Query: 61 FQAYYLKVQYPVEKALTEKLTTLGNGVSIIQLVQYPVSGFVFEGGACLEDLSDVVSKVCI 120
FQAYYL + +P+EKA T+K+TT +GV I +L+ YPV +FEGG+ +++LSD VS C+
Sbjct: 239 FQAYYLAMPFPLEKAPTKKITTTVSGVKISELLSYPVRSLLFEGGSSMQELSDTVSDCCV 298
Query: 121 FLQENNKPFNALISESGKRVFLLPQCYAEKQALGRVSQEFLDMRINPAVWELSGHLVLKR 180
LQ NN PFN LIS+ G+++FL+PQCYAEKQALG VS E L+ ++NPAVWE+SGH+VLKR
Sbjct: 299 CLQNNNIPFNILISDCGRQIFLMPQCYAEKQALGEVSPEVLETQVNPAVWEISGHMVLKR 358
Query: 181 RKDYDEASEATICRFLVEASLSESEFQELKSCILEFLSSAAPEE 224
++DY+ ASE R L EASLSE F+E+ + E + + EE
Sbjct: 359 KEDYEGASEDNAWRLLAEASLSEERFKEVTALAFEAIGCSNQEE 402
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,717,325
Number of extensions: 184785
Number of successful extensions: 420
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 129
Effective length of database: 8,502,049
Effective search space: 1096764321
Effective search space used: 1096764321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)