BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0898900 Os01g0898900|AK120093
(402 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59360.1 | chr3:21935826-21939642 REVERSE LENGTH=406 554 e-158
AT2G43240.1 | chr2:17971280-17975300 REVERSE LENGTH=407 548 e-156
AT5G41760.1 | chr5:16706978-16709204 FORWARD LENGTH=341 145 4e-35
AT4G35335.1 | chr4:16807286-16810015 FORWARD LENGTH=353 112 4e-25
>AT3G59360.1 | chr3:21935826-21939642 REVERSE LENGTH=406
Length = 405
Score = 554 bits (1427), Expect = e-158, Method: Compositional matrix adjust.
Identities = 270/404 (66%), Positives = 324/404 (80%), Gaps = 6/404 (1%)
Query: 2 SGEVECRVCHAKVQVPMAAAAVSKAYDIHRSSVSSRQRALNVLLVSGDCVLAGLQPILVY 61
+G EC CH+K+ P + +S+AYD H+ VSS+QR LNVLLV GDC+L GLQP+LVY
Sbjct: 3 NGIAECPACHSKLVSP-GSKTISRAYDDHKIRVSSKQRVLNVLLVVGDCMLVGLQPVLVY 61
Query: 62 MCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNNVL 121
M KVDGKF FSP+SVNFLTEI K+IFAI+ML IQAR KVGEKP L+VSTF+QAARNNVL
Sbjct: 62 MSKVDGKFNFSPISVNFLTEIAKVIFAIVMLLIQARHQKVGEKPLLSVSTFVQAARNNVL 121
Query: 122 LAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRRFSTIQWEALAL 181
LAVPAL YAINNY+KF MQLYFNPATVKML N M+RRFS IQWEALAL
Sbjct: 122 LAVPALLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMVMKRRFSIIQWEALAL 181
Query: 182 LLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSIYL 241
LLIGISVNQL+SLPEG++ +G+P+A GAY+ T+ FVTVP++ASV+NE ALKSQ+DTSIYL
Sbjct: 182 LLIGISVNQLRSLPEGATAIGIPLATGAYVCTVIFVTVPSMASVFNEYALKSQYDTSIYL 241
Query: 242 QNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFKYA 301
QNLFLYGYGAIFNFLG++ T I +GP SF+IL+GHS+ATMFLI NNAAQGILSSFFFKYA
Sbjct: 242 QNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFKYA 301
Query: 302 DTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQYLSNQIK---DEVPS 358
DTILKKYSST+ATIFTG+ASA LFGH +T+NF+L ISIV ISMHQ+ S K ++ +
Sbjct: 302 DTILKKYSSTVATIFTGIASAALFGHVITMNFLLGISIVFISMHQFFSPLAKARDEQQQN 361
Query: 359 SKIEMGDAHE-HRSKESVVVNVSDSIATEAKHRHGTDERQPLLP 401
+E+G+ + HR+ ES +N++ EA HR +D+R PLLP
Sbjct: 362 GNLELGNTKDTHRANES-FINMAAGANEEASHRGESDDRTPLLP 404
>AT2G43240.1 | chr2:17971280-17975300 REVERSE LENGTH=407
Length = 406
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 270/405 (66%), Positives = 326/405 (80%), Gaps = 7/405 (1%)
Query: 2 SGEVECRVCHAKVQVPMAAAAVSKAYDIH--RSSVSSRQRALNVLLVSGDCVLAGLQPIL 59
+G EC VC +++ P ++ A+S+AYD + + VSS+QRALNV LV GDC+L GLQP+L
Sbjct: 3 NGMAECSVCRSRLVSP-SSKAISRAYDNYNYKIRVSSKQRALNVFLVVGDCMLVGLQPVL 61
Query: 60 VYMCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVSTFMQAARNN 119
VYM KVDGKF FSP+SVNFLTEI K+IFA++ML QAR KVGEKP L++STF+QAARNN
Sbjct: 62 VYMSKVDGKFNFSPISVNFLTEIAKVIFAMVMLLFQARHQKVGEKPLLSLSTFVQAARNN 121
Query: 120 VLLAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRRFSTIQWEAL 179
+LLAVPA YAINNY+KF MQLYFNPATVKML N M+RRFS IQWEAL
Sbjct: 122 MLLAVPAGLYAINNYLKFTMQLYFNPATVKMLSNLKVLVIAVLLKMIMKRRFSIIQWEAL 181
Query: 180 ALLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKALKSQFDTSI 239
ALLLIGIS+NQL+SLPEG++T+ +P+A GAY+ T FVTVP+LASVYNE ALKSQ+DTSI
Sbjct: 182 ALLLIGISINQLRSLPEGATTVAVPIATGAYICTFIFVTVPSLASVYNEYALKSQYDTSI 241
Query: 240 YLQNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQGILSSFFFK 299
YLQNLFLYGYGAIFNFLG++ T I +GP SF+IL+GHS+ATMFLI NNAAQGILSSFFFK
Sbjct: 242 YLQNLFLYGYGAIFNFLGILGTVIYKGPGSFDILQGHSRATMFLILNNAAQGILSSFFFK 301
Query: 300 YADTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQYLS--NQIKDEVP 357
YADTILKKYSST+ATIFTG+ASA LFGH LT+NF+L ISIV ISMHQ+ S ++ KDE
Sbjct: 302 YADTILKKYSSTVATIFTGIASAALFGHILTMNFLLGISIVFISMHQFFSPLSKAKDEQQ 361
Query: 358 SSKIEMGDAHE-HRSKESVVVNVSDSIATEAKHRHGTDERQPLLP 401
+ IE+ DA + HR+K+S +N++ EA HR +D+R PLLP
Sbjct: 362 NGNIELVDAKDGHRAKDS-FINMAAGATEEASHRIESDDRVPLLP 405
>AT5G41760.1 | chr5:16706978-16709204 FORWARD LENGTH=341
Length = 340
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 169/339 (49%), Gaps = 20/339 (5%)
Query: 51 VLAGLQPILVYMCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVS 110
+L Q IL + + DG +K+ +V FL E+ K+I + + L R ++ ++
Sbjct: 15 ILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLW---REMRTSSSTTSRIT 71
Query: 111 TFMQAARNNVLLAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRR 170
T ++ R L +P+L Y I+N ++F Y + +T +++GN ++R+
Sbjct: 72 TDWKSVR---LFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKRK 128
Query: 171 FSTIQWEALALLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKA 230
S +QW A+ LL +G + +Q+K E S YL + + ALA +Y E
Sbjct: 129 LSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYTEFL 188
Query: 231 LKSQFDTSIYLQNLFLYGYGAIFNFLGLVIT----AIIQGPSSFNILEGHSKATMFLICN 286
+K DT +Y QNL LY +G++FN L+ +GP I +G+S T ++ N
Sbjct: 189 MKRNNDT-LYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVLN 247
Query: 287 NAAQGILSSFFFKYADTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQ 346
+ G+L S+ KYAD I+K YS+++A + T VAS LF T+ L I I I+S+H
Sbjct: 248 LGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHM 307
Query: 347 YLSNQIKDEVPSSKIEM---GDAHEHRSKESVVVNVSDS 382
Y + P + +++ +AH K+ VV +DS
Sbjct: 308 YFAP------PHTLVDLPVTNEAHAKTLKQVVVEEKTDS 340
>AT4G35335.1 | chr4:16807286-16810015 FORWARD LENGTH=353
Length = 352
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 10/303 (3%)
Query: 51 VLAGLQPILVYMCKVDGKFKFSPVSVNFLTEITKIIFAIIMLCIQARRLKVGEKPFLTVS 110
+L Q IL+ K GK+++S + NFL K +++ L + V + L+ +
Sbjct: 60 ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS-T 118
Query: 111 TFMQAARNNVLLAVPALFYAINNYMKFVMQLYFNPATVKMLGNXXXXXXXXXXXXXMRRR 170
TF + + +PA Y N +++ + Y + ++L N ++R+
Sbjct: 119 TFDEVK----VFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRK 174
Query: 171 FSTIQWEALALLLIGISVNQLKSLPEGSSTLGLPVAAGAYLYTLFFVTVPALASVYNEKA 230
S IQW LL G + QL S + LP + + + A VY E
Sbjct: 175 LSEIQWAGFILLCCGCTTAQLNSNSDRVLQTSLP----GWTMAIVMALLSGFAGVYTEAI 230
Query: 231 LKSQFDTSIYLQNLFLYGYGAIFNFLGLVITAIIQGPSSFNILEGHSKATMFLICNNAAQ 290
+K + +I +QN +LY +G FN + +VI ++ G+S T+ +I N+A
Sbjct: 231 IKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDF-DAVANKGFFHGYSFITLLMILNHALS 289
Query: 291 GILSSFFFKYADTILKKYSSTIATIFTGVASAVLFGHTLTINFVLAISIVIISMHQYLSN 350
GI S KYAD I+K YS+++A + T V S LF L++ F L ++V +S++ + +
Sbjct: 290 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAG 349
Query: 351 QIK 353
+++
Sbjct: 350 KLR 352
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,340,457
Number of extensions: 265912
Number of successful extensions: 852
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 842
Number of HSP's successfully gapped: 4
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)