BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0894600 Os01g0894600|AK073332
(219 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62460.1 | chr5:25075545-25077072 FORWARD LENGTH=308 114 6e-26
AT3G47550.3 | chr3:17523841-17525278 FORWARD LENGTH=289 112 2e-25
AT1G14260.1 | chr1:4873200-4874430 FORWARD LENGTH=266 108 2e-24
AT2G02960.5 | chr2:862440-863980 REVERSE LENGTH=276 105 1e-23
AT1G02610.1 | chr1:553181-555854 REVERSE LENGTH=222 94 4e-20
AT2G01275.1 | chr2:142610-143809 REVERSE LENGTH=260 93 1e-19
AT5G38070.1 | chr5:15190254-15191588 FORWARD LENGTH=260 89 2e-18
AT4G02075.1 | chr4:913555-916414 REVERSE LENGTH=219 79 2e-15
AT4G34100.1 | chr4:16330590-16334864 FORWARD LENGTH=1109 57 8e-09
AT4G32670.1 | chr4:15759527-15762847 REVERSE LENGTH=861 55 2e-08
AT2G45530.1 | chr2:18756604-18757326 FORWARD LENGTH=241 55 3e-08
AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467 52 3e-07
AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495 47 5e-06
>AT5G62460.1 | chr5:25075545-25077072 FORWARD LENGTH=308
Length = 307
Score = 114 bits (284), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Query: 40 IECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPP 99
+ECRICQEE ++SPC+C+G+LK+AHRKC+QRWC++KG+ TCEIC++ Y P Y PP
Sbjct: 76 VECRICQEEDSVKNLESPCSCSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYQPGYTAPP 135
Query: 100 TKCCSAEMDMDLRQSWVG--RIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCXX 157
+ +D+ + W +D +D +D+ SNSSGA C
Sbjct: 136 PPPADDTI-IDIGEDWGNGVHLDLNDPRILAMAAAERHFFDADYDEYADSNSSGAAFCRS 194
Query: 158 XXXXXXXXXXXXXXXXXXXXXSMLQD---ATVLFSATLQFAGFFLPCYVIARSCYAFQHR 214
S ++ + F L+ AGF LPCY++A + Q R
Sbjct: 195 AALILMALLLLRHALNLTNNNSDDEEDDPSAFFFLFMLRAAGFLLPCYIMAWAISILQRR 254
Query: 215 RRRQ 218
R+RQ
Sbjct: 255 RQRQ 258
>AT3G47550.3 | chr3:17523841-17525278 FORWARD LENGTH=289
Length = 288
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 87/182 (47%), Gaps = 4/182 (2%)
Query: 40 IECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPP 99
+ECRICQEE +++PCAC G+LK+AHRKC+QRWC++KG+ITCEIC+Q Y Y P
Sbjct: 67 VECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDITCEICHQPYQHGYTA-P 125
Query: 100 TKCCSAEMDMDLRQSWVGRI--DPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCXX 157
E + + W + D D +D+ +NSSGA C
Sbjct: 126 PPPPPDETIIHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENNSSGAAFCRS 185
Query: 158 XXXXXXXXXXXXXXXXXXXXXSMLQDATVLFSA-TLQFAGFFLPCYVIARSCYAFQHRRR 216
D T FS L+ AGF LPCY++A + Q RR+
Sbjct: 186 AALILMALLLLRDALNLTTNPDDEDDPTAFFSLFLLRAAGFLLPCYIMAWAIGILQRRRQ 245
Query: 217 RQ 218
RQ
Sbjct: 246 RQ 247
>AT1G14260.1 | chr1:4873200-4874430 FORWARD LENGTH=266
Length = 265
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Query: 41 ECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPT 100
ECRICQ+E D ++SPCAC G+LK+AHRKC+QRWC++KGN CEIC+Q Y Y PP
Sbjct: 56 ECRICQDECDIKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQPYQAGYTSPPP 115
Query: 101 KCCSAEMDMDLRQSW-VGRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATC--CXX 157
S E +D+ W + +D D +DD +S++SGA
Sbjct: 116 PPQSEETTIDIGGGWRISGLDLDDPRLLAIAEAERQILESEYDDYTASDTSGAAFFRSAA 175
Query: 158 XXXXXXXXXXXXXXXXXXXXXSMLQDATVLFSATLQFAGFFLPCYVIARSCYAFQHRRRR 217
+++L L+ A F LPCY++A + RR+R
Sbjct: 176 LILMTLLLLRHALTIPDYSDSEDDDPSSILSLFLLRAASFLLPCYIMASAISILHRRRQR 235
Query: 218 Q 218
Q
Sbjct: 236 Q 236
>AT2G02960.5 | chr2:862440-863980 REVERSE LENGTH=276
Length = 275
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 41 ECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPT 100
ECRIC +E ++SPCAC+G+LK+AHRKC+QRWC++KGNI CEIC+Q Y P Y PP
Sbjct: 42 ECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQPYQPGYTAPPP 101
Query: 101 KCCSAEMDMDLRQSW-VGRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCC 155
E +D+ W + +D HD + + +S++SGA C
Sbjct: 102 PLQPEETTIDIGGGWTISGLDVHDPRLLAIAEAERRYLESEYVEYTASSASGAAFC 157
>AT1G02610.1 | chr1:553181-555854 REVERSE LENGTH=222
Length = 221
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 75/178 (42%), Gaps = 3/178 (1%)
Query: 42 CRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPTK 101
CRIC EE E ++PC+C+GT+KFAHR CIQRWCD+KGN CEIC Q Y P Y
Sbjct: 20 CRICHEEEAESYFEAPCSCSGTIKFAHRDCIQRWCDEKGNTICEICLQEYKPGYTTTSKP 79
Query: 102 CCSAEMDMDLRQSWVGRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCXXXXXX 161
E + +R + I ++ F +C S GA+CC
Sbjct: 80 SRFIETAVTIRDNL--HIMRRENGRRRRNRRLVNREESDFQECNSGVDRGASCCRYLALI 137
Query: 162 XXXXXXXXXXXXXXXXXSMLQDATVLFSATLQFAGFFLPCYVIARSCYAFQHRRRRQV 219
T+ TL+ G LP VI R+ A Q R Q+
Sbjct: 138 FSVILLIKHAFDAVYGTEEY-PYTIFTVLTLKAIGILLPMLVIIRTITAIQRSLRYQI 194
>AT2G01275.1 | chr2:142610-143809 REVERSE LENGTH=260
Length = 259
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 5/167 (2%)
Query: 41 ECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPT 100
ECRIC +E + M++PC+C+G++K+AHR+C+QRWC++KG+ TCEIC+Q + P+Y PP
Sbjct: 58 ECRICHDEDLDSNMETPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDYTAPPP 117
Query: 101 KCCSAEMDMDLRQSWVGRIDPHDSHFXXXXXXXXXXXXXXFDDCVSSNSSGATCCXXXXX 160
+ + R +W I + F + S+++ CC
Sbjct: 118 LLELGHVPLHFRGNW--GISQREHRFITVVPADSTFIDQPYP---LSSTTSFICCRSLVL 172
Query: 161 XXXXXXXXXXXXXXXXXXSMLQDATVLFSATLQFAGFFLPCYVIARS 207
S L + L+ G LP YV+ ++
Sbjct: 173 IFMALLILRHTLPLVLTGSNLHVFPLFTLLFLRILGIMLPIYVVTKA 219
>AT5G38070.1 | chr5:15190254-15191588 FORWARD LENGTH=260
Length = 259
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%)
Query: 40 IECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPP 99
++CRIC +E ++ MD+PC+C+GTLKFAH C+QRWC++KG+ CEIC Q Y P Y P
Sbjct: 52 VQCRICHDEDEDTNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYKPGYTAPR 111
Query: 100 TKCCSAEMDMDLRQSW 115
+ M+ W
Sbjct: 112 QLFHYTGISMNFGSDW 127
>AT4G02075.1 | chr4:913555-916414 REVERSE LENGTH=219
Length = 218
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 42 CRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNY--VLPP 99
CRIC EE +E + PCAC+GT+KFAHR CIQRWC++KGN TCEIC QVY Y VL
Sbjct: 20 CRICHEEEEESFFEVPCACSGTVKFAHRNCIQRWCNEKGNTTCEICLQVYKDGYTAVLKQ 79
Query: 100 TKCCSAEMDM 109
+K E+ +
Sbjct: 80 SKLIEQEVTI 89
>AT4G34100.1 | chr4:16330590-16334864 FORWARD LENGTH=1109
Length = 1108
Score = 57.0 bits (136), Expect = 8e-09, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 42 CRICQEEGD-EGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYS 92
CRIC+ GD + + PCAC+G++KF H+ C+ +W + CE+C +S
Sbjct: 68 CRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFS 119
>AT4G32670.1 | chr4:15759527-15762847 REVERSE LENGTH=861
Length = 860
Score = 55.5 bits (132), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 42 CRICQE-EGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYS 92
CRICQ E + + PCAC G+LK+ H C+ W +++ CEIC + YS
Sbjct: 33 CRICQSPEEPDNPLRHPCACRGSLKYIHSDCLFLWLNRRKRNHCEICKRSYS 84
>AT2G45530.1 | chr2:18756604-18757326 FORWARD LENGTH=241
Length = 240
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 41 ECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVLPPT 100
+CR+C ++ +E ++ C C G L AHR CI W KG+ CEIC QV + N P T
Sbjct: 73 QCRVCLQDKEEVLIELGCQCRGGLAKAHRSCIDAWFRTKGSNQCEIC-QVVAVNVTPPET 131
Query: 101 KCCSAEMDMDLRQSWVGRIDP 121
+ + WV RIDP
Sbjct: 132 QPTT--------NYWVWRIDP 144
>AT5G03180.2 | chr5:754201-756411 REVERSE LENGTH=467
Length = 466
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 42 CRIC--QEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQ 89
CRIC + E DE A C C G L AH+ C +W KGNITC++C Q
Sbjct: 251 CRICMVEMEEDEEAFKMECMCKGELALAHKTCTIKWFTIKGNITCDVCKQ 300
>AT5G60580.2 | chr5:24354298-24356706 FORWARD LENGTH=495
Length = 494
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 42 CRICQEEGDEGA--MDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQ 89
CRIC E EG + C+C G L AH+ C +W KGN TCE+C Q
Sbjct: 257 CRICLVELCEGGETLKMECSCKGELALAHKDCALKWFTIKGNKTCEVCKQ 306
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.136 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,442,970
Number of extensions: 115541
Number of successful extensions: 347
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 16
Length of query: 219
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 124
Effective length of database: 8,502,049
Effective search space: 1054254076
Effective search space used: 1054254076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 109 (46.6 bits)