BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0892500 Os01g0892500|J065043G16
(119 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G57590.1 | chr1:21327458-21329707 REVERSE LENGTH=445 105 6e-24
AT5G26670.1 | chr5:9318456-9320816 FORWARD LENGTH=417 103 2e-23
AT3G62060.1 | chr3:22980123-22982734 FORWARD LENGTH=420 102 3e-23
AT3G09410.1 | chr3:2898243-2900984 REVERSE LENGTH=428 100 1e-22
AT3G05910.1 | chr3:1764509-1767240 REVERSE LENGTH=416 99 6e-22
AT1G09550.1 | chr1:3089733-3092254 REVERSE LENGTH=389 98 1e-21
AT4G19420.1 | chr4:10587504-10589807 REVERSE LENGTH=398 96 5e-21
AT3G09405.1 | chr3:2895009-2897366 REVERSE LENGTH=410 95 8e-21
AT2G46930.1 | chr2:19283625-19286090 FORWARD LENGTH=417 92 7e-20
AT4G19410.1 | chr4:10582188-10584766 REVERSE LENGTH=392 91 1e-19
AT5G45280.2 | chr5:18346862-18349488 FORWARD LENGTH=392 89 5e-19
AT5G23870.3 | chr5:8046060-8049999 REVERSE LENGTH=452 87 2e-18
>AT1G57590.1 | chr1:21327458-21329707 REVERSE LENGTH=445
Length = 444
Score = 105 bits (262), Expect = 6e-24, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 31 VVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTT 90
+V L L+ A KGAVCLDGS PGYHL RGFGSG ++WL+ LEGG WCDTI +C RKTT
Sbjct: 79 MVGLTLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANNWLVQLEGGGWCDTIRNCVYRKTT 138
Query: 91 ELGSSKLMEAQ-EFEGILSNNQTVN 114
GSS ME + F GILS+ N
Sbjct: 139 RRGSSSYMEKEIPFTGILSDKAADN 163
>AT5G26670.1 | chr5:9318456-9320816 FORWARD LENGTH=417
Length = 416
Score = 103 bits (257), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 31 VVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTT 90
+V L L+ GA KGAVCLDG+ PGYHL RG GSG +SWLI LEGG WCD I +C RK +
Sbjct: 52 MVGLTLIRGAGSKGAVCLDGTLPGYHLHRGHGSGANSWLIQLEGGGWCDNIRNCVYRKKS 111
Query: 91 ELGSSKLMEAQ-EFEGILSNNQTVN 114
GSS ME Q +F GILSN N
Sbjct: 112 RRGSSNYMEKQIQFTGILSNKAQEN 136
>AT3G62060.1 | chr3:22980123-22982734 FORWARD LENGTH=420
Length = 419
Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 31 VVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTT 90
++ L L+ GA KGAVCLDG+ PGYHL RGFGSG +SWLI LEGG WC+ SC RKT+
Sbjct: 54 MIPLTLIHGADSKGAVCLDGTLPGYHLDRGFGSGANSWLIQLEGGGWCNNHRSCVYRKTS 113
Query: 91 ELGSSKLME-AQEFEGILSNNQTVN 114
GSSK ME A F GILSN N
Sbjct: 114 RRGSSKFMEKALAFTGILSNRSEEN 138
>AT3G09410.1 | chr3:2898243-2900984 REVERSE LENGTH=428
Length = 427
Score = 100 bits (250), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/86 (53%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 30 DVVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKT 89
D+V+L L + A+E+GA CLDGS PGYH G GSG SWL++LEGG WC+T+ SCS R
Sbjct: 59 DLVKLKLSSVAKERGAFCLDGSLPGYHFHEGSGSGSQSWLVHLEGGGWCNTVASCSARAL 118
Query: 90 TELGSSKLMEAQ-EFEGILSNNQTVN 114
T+LGSS E + F+G+LS++ + N
Sbjct: 119 TKLGSSNYFEQEVAFQGVLSSDPSQN 144
>AT3G05910.1 | chr3:1764509-1767240 REVERSE LENGTH=416
Length = 415
Score = 98.6 bits (244), Expect = 6e-22, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 31 VVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTT 90
+V L L+ GA + GAVCLDG+ PGYHL RG GSG +SWLI LEGG WC+ I +C RKTT
Sbjct: 52 MVGLTLIRGA-DSGAVCLDGTLPGYHLHRGHGSGANSWLIQLEGGGWCNNIRTCVYRKTT 110
Query: 91 ELGSSKLMEAQ-EFEGILSNNQTVN 114
GSS ME Q +F GILS+ N
Sbjct: 111 RRGSSNYMEKQLQFTGILSDKAQEN 135
>AT1G09550.1 | chr1:3089733-3092254 REVERSE LENGTH=389
Length = 388
Score = 97.8 bits (242), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 31 VVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTT 90
+V L L+ A KGAVCLDGS PGYHL RG+GSG ++W+I L+GG WCD+I++C +RK +
Sbjct: 41 MVGLTLVQAAAAKGAVCLDGSVPGYHLCRGYGSGANNWIIQLQGGAWCDSIQNCQSRKGS 100
Query: 91 ELGSSKLMEAQ-EFEGILSNNQTVN 114
GSS LME + F G+LSN N
Sbjct: 101 GYGSSTLMEKELAFLGLLSNKAAEN 125
>AT4G19420.1 | chr4:10587504-10589807 REVERSE LENGTH=398
Length = 397
Score = 95.9 bits (237), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/84 (54%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 32 VELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTTE 91
V + + A KGAVCLDGSPP YHL RG G+G +SWLI LEGG WC+ + +C +R T
Sbjct: 25 VNITFVRNAVAKGAVCLDGSPPAYHLDRGSGTGINSWLIQLEGGGWCNNVTNCVSRMHTR 84
Query: 92 LGSSKLM-EAQEFEGILSNNQTVN 114
LGSSK M E F ILSN + N
Sbjct: 85 LGSSKKMVENLAFSAILSNKKQYN 108
>AT3G09405.1 | chr3:2895009-2897366 REVERSE LENGTH=410
Length = 409
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 30 DVVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKT 89
D+V+L L + A+E+GA CLDGS PGYH +G GSG +SWL+YLEGG C TIESCS R
Sbjct: 49 DLVKLKLSSKAKERGAFCLDGSLPGYHFHKGSGSGSNSWLLYLEGGGGCRTIESCSARAM 108
Query: 90 TELGSSKLMEAQ-EFEGILSNNQTVN 114
T LGSS E + F G+LS++ + N
Sbjct: 109 TRLGSSNFFEHEVPFFGVLSSDPSQN 134
>AT2G46930.1 | chr2:19283625-19286090 FORWARD LENGTH=417
Length = 416
Score = 91.7 bits (226), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 31 VVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTT 90
+V L L+ A KGAVCLDG+ PGYHL G GSG + WLI LEGG WC+T SC RKTT
Sbjct: 52 MVPLTLIQAAASKGAVCLDGTLPGYHLHPGSGSGANRWLIQLEGGGWCNTRRSCIFRKTT 111
Query: 91 ELGSSKLME-AQEFEGILSNNQTVN 114
GSS ME F GILSN N
Sbjct: 112 RRGSSNHMEKVLAFTGILSNKSNEN 136
>AT4G19410.1 | chr4:10582188-10584766 REVERSE LENGTH=392
Length = 391
Score = 90.9 bits (224), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 32 VELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTTE 91
V + L A KGAVCLDGS P YH +GFGSG ++W++++EGG WC + SC+ RK T
Sbjct: 24 VPITYLQSAVAKGAVCLDGSAPAYHFDKGFGSGVNNWIVHMEGGGWCTDVASCNERKGTM 83
Query: 92 LGSSKLMEAQ-EFEGILSNNQTVN 114
GSSK M F GIL Q+ N
Sbjct: 84 KGSSKFMNKDFGFSGILGGKQSTN 107
>AT5G45280.2 | chr5:18346862-18349488 FORWARD LENGTH=392
Length = 391
Score = 89.0 bits (219), Expect = 5e-19, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 32 VELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTTE 91
V + L A KGAVCLDGS P YH +G GSG ++W++++EGG WC I +C RK+T
Sbjct: 24 VPITYLESAVAKGAVCLDGSAPAYHFDKGSGSGVNNWIVHMEGGGWCTDIATCVQRKSTM 83
Query: 92 LGSSKLMEAQ-EFEGILSNNQTVN 114
GSSKLM F GIL Q+ N
Sbjct: 84 KGSSKLMNKDFGFSGILGGKQSTN 107
>AT5G23870.3 | chr5:8046060-8049999 REVERSE LENGTH=452
Length = 451
Score = 87.4 bits (215), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 32 VELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTTE 91
V + L+ A GA CLDGS P YHL RGFG+G ++W++ EGG WC+ I SC R T
Sbjct: 35 VSMTLVRDAAALGAFCLDGSLPAYHLDRGFGAGSNNWILQFEGGGWCNDIASCVERAKTR 94
Query: 92 LGSSKLM-EAQEFEGILSNNQTVN 114
GS++ M + F G+LSNN + N
Sbjct: 95 RGSTRYMSKTVVFTGVLSNNASQN 118
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,212,763
Number of extensions: 85317
Number of successful extensions: 154
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 12
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)