BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0891000 Os01g0891000|AK070632
(526 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G65590.1 | chr1:24385996-24390989 FORWARD LENGTH=536 709 0.0
AT3G55260.1 | chr3:20489317-20492858 FORWARD LENGTH=542 561 e-160
AT1G05590.1 | chr1:1669871-1671686 FORWARD LENGTH=581 216 2e-56
>AT1G65590.1 | chr1:24385996-24390989 FORWARD LENGTH=536
Length = 535
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/511 (63%), Positives = 402/511 (78%), Gaps = 5/511 (0%)
Query: 21 AIELTDHIDLWPMPTSVSHGTQRLYVSKDITMSMEGSTYPDGKGILKDAFQRVVDLMKLN 80
A E + + +WP+P VSHG +R+Y+S D + EGS Y D GILK+ F R++ +++L+
Sbjct: 25 AFEDIERLRIWPLPAQVSHGGRRMYLSGDFKLVTEGSKYGDASGILKEGFDRMLGVVRLS 84
Query: 81 HVVDGANPSS-----FVLTGVNVVVHSPEDELKFGVDESYNLSVPTAGYPLRVQIEAQTV 135
HV+ G SS +L G++V++ S DEL++G DESY L VP+ P Q+EA++V
Sbjct: 85 HVISGDRNSSGTGGSALLQGLHVIISSSTDELEYGADESYKLVVPSPEKPSYAQLEAKSV 144
Query: 136 FGALHALQTFSQLCYFDFTSKLIELISAPWRISDTPRFPYRGLLIDTSRHYLPVTVIKKV 195
+GALH LQTFSQLC+F+ K+IE++ PW I D PRF YRGLLIDTSRHYLP+ VIK V
Sbjct: 145 YGALHGLQTFSQLCHFNLKKKVIEILMTPWNIIDQPRFSYRGLLIDTSRHYLPLPVIKNV 204
Query: 196 IDTMAYSKLNVLHWHIVDAQSFPIEIPSYPKLWNGSYSFSERYTTSDAVDIVRYAENRGV 255
ID+M Y+KLNVLHWHIVD QSFP+EIPSYPKLWNG+YS S+RYT DA +IV YA RG+
Sbjct: 205 IDSMTYAKLNVLHWHIVDTQSFPLEIPSYPKLWNGAYSSSQRYTFEDAAEIVNYARRRGI 264
Query: 256 NVMAEIDVPGHALSWGVGYPSLWPSDSCKEPLDVSNNFTFGVIDGILSDFSXXXXXXXXH 315
+V+AEIDVPGHALSWG GYP+LWPS +C+EPLDVS++FTF VIDGILSDFS H
Sbjct: 265 HVLAEIDVPGHALSWGKGYPALWPSKNCQEPLDVSSDFTFKVIDGILSDFSKIFKFKFVH 324
Query: 316 LGGDEVNTSCWTATPHIKKWLDDNQMNVSDAYRYFVLRSQKLAISHGYDVINWEETFNNF 375
LGGDEVNT+CW+ATP I +WL ++M+ +AY+YFVLR+QK+A+SHGY++INWEETF NF
Sbjct: 325 LGGDEVNTTCWSATPRIAQWLKKHRMSEKEAYQYFVLRAQKIALSHGYEIINWEETFINF 384
Query: 376 GDKLDRRTVVHNWLGEDVAPKVVAAGLRCIVSNQDKWYLDHLDATWEGFYTNEPLKGIDD 435
G KL+R+TVVHNWL + V A+GLRCIVSNQ+ WYLDH+DA W+GFY NEP + I D
Sbjct: 385 GSKLNRKTVVHNWLNTGLVENVTASGLRCIVSNQEFWYLDHIDAPWQGFYANEPFQNITD 444
Query: 436 PEQQSLVIGGEVCMWGEQIDASDIEQTIWPRAAAAAERLWTPIEKIAEDPRLVTSRLARF 495
+QQSLV+GGEVCMWGE IDASDIEQTIWPRAAAAAERLWTP K+A++P VT+RLA F
Sbjct: 445 KKQQSLVLGGEVCMWGEHIDASDIEQTIWPRAAAAAERLWTPYAKLAKNPNNVTTRLAHF 504
Query: 496 RCLLNQRGVAAAPVAGYGRTAPYEPGPCVRQ 526
RCLLNQRGVAAAP+ G GR P+EPG C+ Q
Sbjct: 505 RCLLNQRGVAAAPLVGGGRVVPFEPGSCLAQ 535
>AT3G55260.1 | chr3:20489317-20492858 FORWARD LENGTH=542
Length = 541
Score = 561 bits (1445), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/511 (54%), Positives = 343/511 (67%), Gaps = 16/511 (3%)
Query: 30 LWPMPTSVSHGTQRLYVSKDITMSMEGSTYPDGKGILKDAFQRVVDLMKLNHVVDGANPS 89
LWP+P S G + L V +T+ + G+ G I++ AF R + ++ + G+ S
Sbjct: 33 LWPLPAEFSFGNETLSVDPTVTLIVAGNG--GGSLIIRAAFDRYMGIIFKHASGRGSLLS 90
Query: 90 --------SFVLTGVNVVVHSPEDELKFGVDESYNLSVPTAGYPLRV---QIEAQTVFGA 138
+ +T + +VVHS +EL+ GVDESY L V V IEA TV+GA
Sbjct: 91 RIRFLKMVEYDITSLKIVVHSDSEELQLGVDESYTLMVSKKNEQSIVGAATIEANTVYGA 150
Query: 139 LHALQTFSQLCYFDFTSKLIELISAPWRISDTPRFPYRGLLIDTSRHYLPVTVIKKVIDT 198
L L+TFSQLC FD+ +K +++ APW I D PRF YRGLLIDTSRHYLP+ VIK++I++
Sbjct: 151 LRGLETFSQLCAFDYITKSVQIYKAPWYIQDKPRFGYRGLLIDTSRHYLPIDVIKQIIES 210
Query: 199 MAYSKLNVLHWHIVDAQSFPIEIPSYPKLWNGSYSFSERYTTSDAVDIVRYAENRGVNVM 258
M+++KLNVLHWHIVD QSFP+E P+YP LW G+YS ERYT DA +IVR+A+ RG+NVM
Sbjct: 211 MSFAKLNVLHWHIVDEQSFPLETPTYPNLWKGAYSRWERYTVEDASEIVRFAKMRGINVM 270
Query: 259 AEIDVPGHALSWGVGYPSLWPSDSCKEPLDVSNNFTFGVIDGILSDFSXXXXXXXXHLGG 318
AE+DVPGHA SWG GYP LWPS SC+EPLDV+ NFTF VI GIL+D HLGG
Sbjct: 271 AEVDVPGHAESWGTGYPDLWPSLSCREPLDVTKNFTFDVISGILADMRKIFPFELFHLGG 330
Query: 319 DEVNTSCWTATPHIKKWLDDNQMNVSDAYRYFVLRSQKLAISHGYDVINWEETFNNFGDK 378
DEVNT CW T H+K+WL DAY+YFVLR+Q++AIS + +NWEETF++FG
Sbjct: 331 DEVNTDCWKNTTHVKEWLQGRNFTTKDAYKYFVLRAQQIAISKNWTPVNWEETFSSFGKD 390
Query: 379 LDRRTVVHNWLGEDVAPKVVAAGLRCIVSNQDKWYLDHLDATWEGFYTNEPLKGIDDPEQ 438
LD RTV+ NWL D+ K VA G RCI SNQ WYLDHLD WE Y EPL GI+DP
Sbjct: 391 LDPRTVIQNWLVSDICQKAVAKGFRCIFSNQGYWYLDHLDVPWEEVYNTEPLNGIEDPSL 450
Query: 439 QSLVIGGEVCMWGEQIDASDIEQTIWPRAAAAAERLWTPIEKIAEDPRLVTS--RLARFR 496
Q LVIGGEVCMWGE D S + QTIWPRAAAAAER+W+ E +++ +T+ RL FR
Sbjct: 451 QKLVIGGEVCMWGETADTSVVLQTIWPRAAAAAERMWSTREAVSKGNITLTALPRLHYFR 510
Query: 497 CLLNQRGVAAAPVAG-YGRTAPYEPGPCVRQ 526
CLLN RGV AAPV Y R P PG C Q
Sbjct: 511 CLLNNRGVPAAPVDNFYARRPPLGPGSCYAQ 541
>AT1G05590.1 | chr1:1669871-1671686 FORWARD LENGTH=581
Length = 580
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 151/471 (32%), Positives = 224/471 (47%), Gaps = 58/471 (12%)
Query: 91 FVLTGVNVVVHSPEDELKFGVDESYNLSVPTAGYPLRVQIEAQTVFGALHALQTFSQLCY 150
+ L + V V L GVDESY LS+P + + A + +GA+ L+TFSQ+ +
Sbjct: 94 YTLRNLVVTVTDFSLPLHHGVDESYKLSIPIGSF--SAHLLAHSAWGAMRGLETFSQMIW 151
Query: 151 FDFTSKLIELISAPWRISDTPRFPYRGLLIDTSRHYLPVTVIKKVIDTMAYSKLNVLHWH 210
TS + L + I D+P F +RG+L+DTSR+Y V I + I M+ +KLNV HWH
Sbjct: 152 G--TSPDLCLPVGIY-IQDSPLFGHRGVLLDTSRNYYGVDDIMRTIKAMSANKLNVFHWH 208
Query: 211 IVDAQSFPIEIPSYPKL-WNGSYSFSERYTTSDAVDIVRYAENRGVNVMAEIDVPGHALS 269
I D+QSFP+ +PS P L GS YT D IV+Y GV V+ EID PGH S
Sbjct: 209 ITDSQSFPLVLPSEPSLAAKGSLGPDMVYTPEDVSKIVQYGFEHGVRVLPEIDTPGHTGS 268
Query: 270 WGVGYPSL--------WPSDS------CKEP----LDVSNNFTFGVIDGILSDFSXXXXX 311
WG YP + WP+ EP L+ + T+ V+ ++ D
Sbjct: 269 WGEAYPEIVTCANMFWWPAGKSWEERLASEPGTGQLNPLSPKTYEVVKNVIQDIVNQFPE 328
Query: 312 XXXHLGGDEVNTSCWTATPHIKKWLDDNQMNVSDAYRYFVLRSQKLAISHGYDVINWEET 371
H GGDEV CW P I +L +S ++ + +S V+ WE+
Sbjct: 329 SFFHGGGDEVIPGCWKTDPAINSFLSSGG-TLSQLLEKYINSTLPYIVSQNRTVVYWEDV 387
Query: 372 FNNFGDKLD------RRTVVHNW-LGEDVAPKVVAAGLRCIVSNQDKWYLDHLDA----- 419
+ K D T++ W G + ++VAAG R IVS+ + +YLD
Sbjct: 388 LLDAQIKADPSVLPKEHTILQTWNNGPENTKRIVAAGYRVIVSSSEFYYLDCGHGGFLGN 447
Query: 420 -------------------TWEGFYTNEPLKGIDDPEQQSLVIGGEVCMWGEQIDASDIE 460
TW+ Y + G+ + E++ LV+GGEV +W EQ D++ ++
Sbjct: 448 DSIYDQKESGGGSWCAPFKTWQSIYNYDIADGLLNEEERKLVLGGEVALWSEQADSTVLD 507
Query: 461 QTIWPRAAAAAERLWTPI--EKIAEDPRLVTSRLARFRCLLNQRGVAAAPV 509
+WPRA+A AE LW+ E+ + RL +R + +RG+ A P+
Sbjct: 508 SRLWPRASALAESLWSGNRDERGVKRCGEAVDRLNLWRYRMVKRGIGAEPI 558
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,897,402
Number of extensions: 519765
Number of successful extensions: 983
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 4
Length of query: 526
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 423
Effective length of database: 8,282,721
Effective search space: 3503590983
Effective search space used: 3503590983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)