BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0885600 Os01g0885600|AK059523
         (400 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10030.1  | chr4:6270490-6273098 REVERSE LENGTH=381            481   e-136
AT3G52570.1  | chr3:19501145-19502795 FORWARD LENGTH=336          176   1e-44

>AT4G10030.1 | chr4:6270490-6273098 REVERSE LENGTH=381
          Length = 380

 Score =  481 bits (1237), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/321 (73%), Positives = 266/321 (82%), Gaps = 4/321 (1%)

Query: 71  VQMALANTRIAYQPDVQKHSGVLAYELVQGSLVQWNSFMDKSVPDPPTAVLLHGILGSRK 130
           V+MAL   R +   DV +   VLAY+LVQG+LV+W    DKSVPD PTAVLLHGILGS K
Sbjct: 61  VRMALVEERQSTSKDVAEPPRVLAYDLVQGALVKWRWKDDKSVPDTPTAVLLHGILGSGK 120

Query: 131 NWGSFAKRLAQEFPMWQFLLVDLRCHGDSASIKKRGPHTVASTALDVLKLIVQLRLTPRV 190
           NWG+FA+RLA EFP WQFLLVDLRCHGDS S+KKRGPH+VA+TA DVLKL+ QLRLTPRV
Sbjct: 121 NWGTFARRLAHEFPTWQFLLVDLRCHGDSTSLKKRGPHSVATTASDVLKLVGQLRLTPRV 180

Query: 191 LVGHSFGGKVALSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIESLRRMPM 250
           LVGHSFGGKV LSMVEQAAKPL RPVR WVLDATPGKVRAGGDGEDHP ELI  LR++P 
Sbjct: 181 LVGHSFGGKVVLSMVEQAAKPLPRPVRAWVLDATPGKVRAGGDGEDHPRELISFLRKLPK 240

Query: 251 QVSSKQEVVDALVKEQFSVDVARWVATNLRRXXXXXXXXXXXXXWIFDLNGISDMYKSYE 310
            V SK+EV+ AL+ E FS DVA+WV TNLR              W FDL+GI+++Y+SYE
Sbjct: 241 VVLSKREVLKALINEGFSNDVAQWVITNLR----PTGPSASSFSWTFDLDGIAELYQSYE 296

Query: 311 ETNLWGIVENVPRGVHINFLKAERSLHRWALDDLQRIHTAEELAADEGGGVEMHVLEDAG 370
           ETNLW  VEN+PRGVH+NFLKAERSLHRWAL+DLQRIH AEELA++EGGGVEMHVLEDAG
Sbjct: 297 ETNLWNFVENLPRGVHVNFLKAERSLHRWALEDLQRIHAAEELASEEGGGVEMHVLEDAG 356

Query: 371 HWVHADNPDGLFRILSSTFRI 391
           HWVH DNPDGLFRILSS+F++
Sbjct: 357 HWVHTDNPDGLFRILSSSFQV 377



>AT3G52570.1 | chr3:19501145-19502795 FORWARD LENGTH=336
          Length = 335

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/286 (37%), Positives = 168/286 (58%), Gaps = 24/286 (8%)

Query: 118 TAVLLHGILGSRKNWGSFAKRLAQEFPM-----WQFLLVDLRCHGDSASIKKRGP-HTVA 171
           TA++LHG+LGS +NW SF++ LA    +     W+ +LVDLR HG SA ++   P H + 
Sbjct: 55  TALILHGLLGSGRNWRSFSRSLASSLSVSSASDWKMILVDLRNHGRSAEVEGLNPPHDLV 114

Query: 172 STALDVLKLIVQLRLT-PRVLVGHSFGGKVALSMVEQAAK-----PLARPVRVWVLDATP 225
           ++A D+  L+       P V++GHS GGKVAL  +E  A+       + P ++WVLD+ P
Sbjct: 115 NSAKDLADLVKASGWNWPDVVIGHSLGGKVALQFMESCARGDFGESASPPKQLWVLDSVP 174

Query: 226 GKVRA-GGDGEDHPAELIESLRRMPMQVSSKQEVVDALVKEQFSVDVARWVATNLRRXXX 284
           G+V+A   DGE    +++++L+ +P  + S++ +VD +V+  FS  ++ W+ +NL+R   
Sbjct: 175 GEVKAEKSDGE--VEKVLKTLQSLPSSIPSRKWLVDRMVELGFSRSLSEWIGSNLKRSGD 232

Query: 285 XXXXXXXXXXWIFDLNGISDMYKSYEETNLWGIVENVPRGVHINFLKAERSLHRWALDDL 344
                     W F+L+G   M+ SY ET+ W ++EN P+   INF+ AE+S  RW  D  
Sbjct: 233 SET-------WTFNLDGAVQMFNSYRETSYWSLLENPPKETEINFVIAEKS-DRWDNDTT 284

Query: 345 QRIHT-AEELAADEGGGVEMHVLEDAGHWVHADNPDGLFRILSSTF 389
           +R+ T A +      G V  H+L ++GHWVH DNP GL  I+S  F
Sbjct: 285 KRLETIANQRQNVAEGKVATHLLRNSGHWVHTDNPKGLLEIVSPNF 330



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,124,354
Number of extensions: 318982
Number of successful extensions: 738
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 299
Effective length of database: 8,337,553
Effective search space: 2492928347
Effective search space used: 2492928347
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)