BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0885200 Os01g0885200|AK100276
         (397 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G57680.1  | chr1:21362749-21363837 REVERSE LENGTH=363          205   4e-53

>AT1G57680.1 | chr1:21362749-21363837 REVERSE LENGTH=363
          Length = 362

 Score =  205 bits (521), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 140/359 (38%), Positives = 195/359 (54%), Gaps = 29/359 (8%)

Query: 1   MPLTREAADAFGVATITLFAIFAVLGLFCIFQSIYFRFRIRRGAFIPLGYFNGPWVTRIV 60
           MPLT+   DAFGV TI L A+  +LGL CI  S YF+  +R+  +I LGYF+GPW+ RI 
Sbjct: 1   MPLTKLVPDAFGVVTICLVALLVLLGLLCIAYSFYFQSHVRKQGYIQLGYFSGPWIIRIT 60

Query: 61  LILITIWWGVGEIVRLSFLKRKLFSSILL----QKGVCDAYILSNLGFAEPSIFFAFAFL 116
            IL  IWW VGEI RLS L+R       L    Q+ VC  YI+SNLGFAEP +F    FL
Sbjct: 61  FILFAIWWAVGEIFRLSLLRRHRRLLSGLDLRWQENVCKWYIVSNLGFAEPCLFLTLMFL 120

Query: 117 LHGSLQKRELGTLNQRWNWKTIGYMLVFCVPVFFVQALLVFVGPTFVKDENNTHGRK--- 173
           L   L K E G L+ +WN  T GY++++C+P+  +Q  +V         E+  +G     
Sbjct: 121 LRAPL-KMESGALSGKWNRDTAGYIILYCLPMLALQLAVVL-------SESRLNGGSGSY 172

Query: 174 -KIAKYFIRTSMPV----GDTNICTYPLFGTIFLGLIDAILMSYVSYVGSRVLSLVINKA 228
            K+   F RT   V     +  +CTYPL  TI LG+  A+L +Y+ ++G ++L LVINK 
Sbjct: 173 VKLPHDFTRTYSRVIIDHDEVALCTYPLLSTILLGVFAAVLTAYLFWLGRQILKLVINKR 232

Query: 229 XXXXXXXXXXXXXXXXPIRVLLLGFSVLPQPGDVAFEVIIFLSFLMMISCTTVGVLLLVY 288
                           P+R+++L  SVL     + FE + FL+FL +     V + LLVY
Sbjct: 233 LQKRVYTLIFSVSSFLPLRIVMLCLSVLTAADKIIFEALSFLAFLSLFCFCVVSICLLVY 292

Query: 289 YPVADSLALREIGQREITEMVPYDDYYYEGASLVANQSFREIE-------RNSDTSTKR 340
           +PV+DS+ALR  G R+  +          GA L+A  S +  E       R+S +ST+ 
Sbjct: 293 FPVSDSMALR--GLRDTDDEDTAVTEERSGALLLAPNSSQTDEGLSLRGRRDSGSSTQE 349



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.145    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,171,281
Number of extensions: 274582
Number of successful extensions: 721
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,337,553
Effective search space: 2467915688
Effective search space used: 2467915688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 113 (48.1 bits)