BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0882500 Os01g0882500|Os01g0882500
         (211 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G58260.1  | chr5:23561075-23561929 REVERSE LENGTH=210          266   6e-72

>AT5G58260.1 | chr5:23561075-23561929 REVERSE LENGTH=210
          Length = 209

 Score =  266 bits (680), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 121/155 (78%), Positives = 140/155 (90%)

Query: 49  DFVGGDLVKPDMGRWLDDVEKHKSLAIYPPHEGGYEGRYLSRLSYQGYYFLDLSARGLGD 108
           D++GGDLVKPD+G+WL DVE+HK++AIY PHEGGYEGRYL+RL  QGYYFLD+SARGLGD
Sbjct: 51  DYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFLDISARGLGD 110

Query: 109 PETTLTKIHPVCPPSLGRQPVARWYFPPEVDYRLSLLHPDAKGLVVWVMEAKVLSKAELQ 168
           PETTL K +PVCP  LG+QP+ARWY+PPEVDYRL+ L P AKGLVVWV+EAKVLSK+ELQ
Sbjct: 111 PETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEAKVLSKSELQ 170

Query: 169 FLAILPDIRPKVRVIAECGNWRKFVWKPLKQIAGL 203
           FLA+LP +RP VRVIAECGNWRKFVWKPL +IA L
Sbjct: 171 FLALLPSLRPNVRVIAECGNWRKFVWKPLAEIANL 205



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.139    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,893,758
Number of extensions: 189702
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 117
Effective length of database: 8,529,465
Effective search space: 997947405
Effective search space used: 997947405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)