BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0879400 Os01g0879400|AK065053
         (472 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67540.2  | chr5:26944253-26945757 REVERSE LENGTH=472          593   e-170
AT3G49880.1  | chr3:18496907-18498398 FORWARD LENGTH=467          588   e-168

>AT5G67540.2 | chr5:26944253-26945757 REVERSE LENGTH=472
          Length = 471

 Score =  593 bits (1528), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 284/456 (62%), Positives = 344/456 (75%), Gaps = 12/456 (2%)

Query: 21  NFDAGCRSSLSFIVWSLVGVALIVCFFSV-------VRQADTRQNHIYFRHLS--ATRXX 71
           N   GCR SL  IVW++VG  L+    S+       + Q  +        HL+    R  
Sbjct: 17  NDAGGCRYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSDQLQVVHHLAHPIVREL 76

Query: 72  XXXXXXHFRLPPPHKVNPRAVKRRGPRKAPKVIDQYLDESSAVHALFFPDERSAV-NPTK 130
                   R+PPP K +PR  KRR  RK   +++++LD+ S +  LFFP  ++A   PTK
Sbjct: 77  IRVEEEVLRMPPPRKRSPRTSKRRS-RKPIPLVEEFLDDKSPIRHLFFPGIKTAAFGPTK 135

Query: 131 G-GNDSMYFYPGRVWLDTDGHAIQAHGGGILYDHITAKYYWYGENKDGLTYQTHPKSTYR 189
             GN++ Y++PG++W+DT G+ IQAHGGGIL D  +  YYWYGE KDG TY  H K   R
Sbjct: 136 DMGNETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPTYHAHKKGPAR 195

Query: 190 VDIIGVSCYSSKDLWSWTNEGIVLPGEPTNFTHDLHKSKVLERPKVIYNDHTGQYVMWMH 249
           VDIIGV CYSSKDLW+W NEGIVL  E TN THDLHKS VLERPKVIYN+ T +YVMWMH
Sbjct: 196 VDIIGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNEKTEKYVMWMH 255

Query: 250 IDDANYTKASVGVAVSNSPTGPFTYLYSFRPHGFESRDMTIFKDDDGSAYLFYSSRDNTE 309
           IDDANYTKASVGVA+SNSPTGPF YLYS RPHGF+SRDMT+FKDDDG AYL YSS  N+ 
Sbjct: 256 IDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSEVNSV 315

Query: 310 LHVSPLTKDYLNITVAMRRILIRRHREAPAVFKLQGTYYMITSGCSGWAPNRALAHAAES 369
           LH+ PLT+DYL++T  M+R+++ +HREAPA+FK Q  YYM+TS C+GWAPN ALAHAAES
Sbjct: 316 LHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEALAHAAES 375

Query: 370 IMGPWETLGNPCVGGNRFFRLTTFLSQSTFVLPLPGLPGTFIFMADRWNPSNLKDSRYVW 429
           IMGPWE LGNPC+GGN+ FRLTTF +QST+V+PLPG+PG FIFMADRWNP++L+DSRYVW
Sbjct: 376 IMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLRDSRYVW 435

Query: 430 LPLFIGGLADEPLDYSFGFPAWSRVSIYWHRKWRLP 465
           LPL IGG AD+PL+++FGFP+WSRVSIYWH KWRLP
Sbjct: 436 LPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 471



>AT3G49880.1 | chr3:18496907-18498398 FORWARD LENGTH=467
          Length = 466

 Score =  588 bits (1516), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 280/463 (60%), Positives = 346/463 (74%), Gaps = 11/463 (2%)

Query: 10  MRNKQRKSSALNFDAGCRSSLSFIVWSLVGVALIV---CFFSVVRQADTRQNHIYFRHLS 66
           M+NK  K +        R S   +V ++VG   ++     +S     D   +     H  
Sbjct: 4   MKNKHNKKATF-----LRCSPFGLVSTVVGCVFMIHLTMLYSRSYSVDLDLSPQLLIHHP 58

Query: 67  ATRXXXXXXXXHFRLPPPHKVNPRAVKRRGPRKAPKVIDQYLDESSAVHALFFPDERSAV 126
             R        +  +PPP K +PRA+KR+ P+    +++++LDE+S +  LFFPD +SA 
Sbjct: 59  IVRELERVEEENIHMPPPRKRSPRAIKRK-PKTPTTLVEEFLDENSQIRHLFFPDMKSAF 117

Query: 127 NPTKGGND--SMYFYPGRVWLDTDGHAIQAHGGGILYDHITAKYYWYGENKDGLTYQTHP 184
            PTK   +  S Y++PGR+W DT+G+ IQAHGGGIL+D I+  YYWYGE KDG TY +H 
Sbjct: 118 GPTKEDTNDTSHYYFPGRIWTDTEGNPIQAHGGGILFDDISKVYYWYGEYKDGPTYLSHK 177

Query: 185 KSTYRVDIIGVSCYSSKDLWSWTNEGIVLPGEPTNFTHDLHKSKVLERPKVIYNDHTGQY 244
           K   RVDIIGV CYSSKDLW+W NEG+VL  E T+ THDLHKS VLERPKVIYN  TG+Y
Sbjct: 178 KGAARVDIIGVGCYSSKDLWTWKNEGVVLAAEETDETHDLHKSNVLERPKVIYNSDTGKY 237

Query: 245 VMWMHIDDANYTKASVGVAVSNSPTGPFTYLYSFRPHGFESRDMTIFKDDDGSAYLFYSS 304
           VMWMHIDDANYTKASVGVA+S++PTGPF YLYS  PHGF+SRDMT++KDDD  AYL YSS
Sbjct: 238 VMWMHIDDANYTKASVGVAISDNPTGPFDYLYSRSPHGFDSRDMTVYKDDDNVAYLIYSS 297

Query: 305 RDNTELHVSPLTKDYLNITVAMRRILIRRHREAPAVFKLQGTYYMITSGCSGWAPNRALA 364
            DN+ LH+ PLT++YL++   M+RI++ +HREAPA+FK Q TYYMITSGC+GWAPN ALA
Sbjct: 298 EDNSVLHIGPLTENYLDVKPVMKRIMVGQHREAPAIFKHQNTYYMITSGCTGWAPNEALA 357

Query: 365 HAAESIMGPWETLGNPCVGGNRFFRLTTFLSQSTFVLPLPGLPGTFIFMADRWNPSNLKD 424
           HAAESIMGPWETLGNPCVGGN  FR TTF +QSTFV+PLPG+PG FIFMADRWNP++L+D
Sbjct: 358 HAAESIMGPWETLGNPCVGGNSIFRSTTFFAQSTFVIPLPGVPGVFIFMADRWNPADLRD 417

Query: 425 SRYVWLPLFIGGLADEPLDYSFGFPAWSRVSIYWHRKWRLPES 467
           SRY+WLPL +GG AD PL+YSFGFP WSRVS+YWHR+WRLP +
Sbjct: 418 SRYLWLPLIVGGPADRPLEYSFGFPMWSRVSVYWHRQWRLPSA 460



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,551,012
Number of extensions: 516216
Number of successful extensions: 877
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 872
Number of HSP's successfully gapped: 2
Length of query: 472
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 370
Effective length of database: 8,310,137
Effective search space: 3074750690
Effective search space used: 3074750690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)