BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0875400 Os01g0875400|AK068371
         (350 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G06599.1  | chr4:3666079-3667495 REVERSE LENGTH=341            464   e-131

>AT4G06599.1 | chr4:3666079-3667495 REVERSE LENGTH=341
          Length = 340

 Score =  464 bits (1193), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/319 (69%), Positives = 263/319 (82%), Gaps = 4/319 (1%)

Query: 32  MTLVAKWKGNDYTVRVVGDDTLGELKRRICEVTGVLPKRQKLLYPKFKLNECKDSELISS 91
           +TL  KW G +YTVR+  DD++ ELKRRIC +T VLPKRQKLLYPK       DS L+SS
Sbjct: 24  LTLTVKWNGKEYTVRICADDSVAELKRRICLLTTVLPKRQKLLYPKIGNKLSDDSLLLSS 83

Query: 92  IPFKPNVKINMIGTVEDEIFVDQEDDPEILNDYEIGQNEVTAIKDKDVYKQKLKRRASQY 151
           I FKP++K+ MIGTVED+I VDQ + PEI++D+E+G+ E   +KDK+V KQKL+RR  QY
Sbjct: 84  ISFKPSLKMTMIGTVEDDIIVDQAESPEIVDDFELGKEEAVDVKDKEVNKQKLRRRIDQY 143

Query: 152 KIKILNPCRKGKKLLVLDIDYTLFDHRSAAENPIELMRPYLHEFLSAAYSEYDIMIWSAT 211
           KI +  PCR+GKKLLVLDIDYTLFDHRS AENP++LMRPYLHEFL+AAY+EYDIMIWSAT
Sbjct: 144 KINLRTPCRQGKKLLVLDIDYTLFDHRSTAENPLQLMRPYLHEFLTAAYAEYDIMIWSAT 203

Query: 212 SMKWVGMKMDQLGVLGNPNYKITALMDHLAMITVQSENLSEKKTFDCKPLGVIWAQFPE- 270
           SMKWV +KM +LGVL NPNYK+TAL+DHLAMITVQS+    +  FDCKPLG+IWA  PE 
Sbjct: 204 SMKWVELKMTELGVLNNPNYKVTALLDHLAMITVQSDT---RGIFDCKPLGLIWALLPEF 260

Query: 271 YNETNTIMFDDLRRNFVMNPQNGLVIKPYKRTHSNRGTDQELVKLTQYLLTIAELEDLSK 330
           YN  NTIMFDDLRRNFVMNPQNGL IKP+++ H+NR TDQELVKLTQYLLTIAEL DLS 
Sbjct: 261 YNPGNTIMFDDLRRNFVMNPQNGLTIKPFRKAHANRDTDQELVKLTQYLLTIAELSDLSS 320

Query: 331 LDHSAWESFTEENAKRRRH 349
           L HS WESF+++N KRRR 
Sbjct: 321 LHHSRWESFSQDNVKRRRQ 339



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,403,245
Number of extensions: 312235
Number of successful extensions: 840
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 3
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)