BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0873900 Os01g0873900|J033117J10
         (130 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34320.1  | chr1:12520713-12524046 FORWARD LENGTH=658          174   2e-44
AT5G08660.1  | chr5:2814526-2817845 FORWARD LENGTH=650            130   2e-31
AT1G30755.1  | chr1:10905991-10908773 REVERSE LENGTH=616          110   2e-25
AT3G23160.1  | chr3:8260059-8261654 REVERSE LENGTH=532             53   5e-08

>AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658
          Length = 657

 Score =  174 bits (440), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/117 (77%), Positives = 102/117 (87%)

Query: 4   AMLKQVSEVSSILGRASTVGLGKAVEVLDTLGSSMANLNINSGFGSGTTTKGNKISILAF 63
           A + +VSEVSS+LGRA T+GLGKAV+VLDTLGSSM NLN++ GF S TT KGNKISIL+F
Sbjct: 101 AAVAKVSEVSSLLGRAGTMGLGKAVDVLDTLGSSMTNLNLSGGFSSATTVKGNKISILSF 160

Query: 64  EVANTIVKGCNLMRALSKESIKHLKEVVLHSEGVQNLISKDMDELLKIYAADKRLAL 120
           EVANTIVKG NLM +LSK+SI HLKEVVL SEGVQNLISKDMDELL+I AADKR  L
Sbjct: 161 EVANTIVKGANLMHSLSKDSITHLKEVVLPSEGVQNLISKDMDELLRIAAADKREEL 217



>AT5G08660.1 | chr5:2814526-2817845 FORWARD LENGTH=650
          Length = 649

 Score =  130 bits (326), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 90/115 (78%), Gaps = 4/115 (3%)

Query: 6   LKQVSEVSSILGRASTVGLGKAVEVLDTLGSSMANLNINSGFGSGTTTKGNKISILAFEV 65
           + +V+E S +LG+A   GLG+A +VLDTLGSSM +L+ + GF SG  TKGN++ ILAFEV
Sbjct: 101 VSKVTEASKLLGKA---GLGRAKDVLDTLGSSMTDLS-SGGFTSGVATKGNELGILAFEV 156

Query: 66  ANTIVKGCNLMRALSKESIKHLKEVVLHSEGVQNLISKDMDELLKIYAADKRLAL 120
           ANTIVK  NL+ +LSK +I+HLK  +L+SEGVQNL+S D DELL++ AADKR  L
Sbjct: 157 ANTIVKSSNLIESLSKRNIEHLKGTILYSEGVQNLVSNDFDELLRLVAADKRQEL 211



>AT1G30755.1 | chr1:10905991-10908773 REVERSE LENGTH=616
          Length = 615

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 84/111 (75%), Gaps = 1/111 (0%)

Query: 11  EVSSILGRASTVGLGKAVEVLDTLGSSMANLNINSGFGSG-TTTKGNKISILAFEVANTI 69
           + +S +GRA  +GL KAVEVLDTLGSSM  +N ++ + SG T+++G K++ILAFEVANTI
Sbjct: 86  QRNSFMGRAGVMGLEKAVEVLDTLGSSMTRMNPSNAYLSGVTSSRGGKVTILAFEVANTI 145

Query: 70  VKGCNLMRALSKESIKHLKEVVLHSEGVQNLISKDMDELLKIYAADKRLAL 120
            KG  L+++LS+E++K +K+ +LHSE V+ L+S D  EL  + A+DKR  L
Sbjct: 146 AKGAALLQSLSEENLKFMKKDMLHSEEVKKLVSTDTTELQILAASDKREEL 196



>AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532
          Length = 531

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 38/59 (64%)

Query: 58  ISILAFEVANTIVKGCNLMRALSKESIKHLKEVVLHSEGVQNLISKDMDELLKIYAADK 116
           I IL+FEVAN + K  +L R+LS   I  LK  V HSEGV+ L+S D + LL +  ++K
Sbjct: 43  IGILSFEVANVMSKTIHLHRSLSDTEISKLKAEVFHSEGVRKLVSSDENHLLDLSVSEK 101



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,153,834
Number of extensions: 75026
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 4
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)