BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0873800 Os01g0873800|AK068140
         (1388 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G35660.1  | chr1:13192743-13197655 FORWARD LENGTH=1406        1183   0.0  

>AT1G35660.1 | chr1:13192743-13197655 FORWARD LENGTH=1406
          Length = 1405

 Score = 1183 bits (3061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1439 (46%), Positives = 880/1439 (61%), Gaps = 118/1439 (8%)

Query: 6    ELQCVGRLEVAAPPPARYLRVGSLPVPTD----XXXXXXXXXXXXXXXXXXRYQMLPLET 61
            +LQC+G + +  P P  +L  GS+PV  D                      RYQMLP+ET
Sbjct: 27   DLQCIGTMVIVPPKPVGFL-CGSIPVLADNSFPASFTSALLPSQETVVTAPRYQMLPMET 85

Query: 62   DLNTLPMIPNIPEKVFPMDAKSTEGSRYGSGLAN---QNLSRKCEALAVSGLAEYGDEID 118
            DLN  P++ + P+ V P+ A  +  +   S  AN    NLS+KCEALAVSGL EYGDEID
Sbjct: 86   DLNLPPLLTDFPDNVLPLAAVKSRITGDISKEANVITSNLSKKCEALAVSGLVEYGDEID 145

Query: 119  VVAPTDILKQIFKIPYSKAQVSIAVNRIGDTLILNTGPDVDEGEKIFRRQSNHPKGS--- 175
            V+AP DILKQIFKIPYSKA+VSIAV R+G TL+LN GPDV+EGEK+ RR +N PK +   
Sbjct: 146  VIAPVDILKQIFKIPYSKARVSIAVQRVGQTLVLNPGPDVEEGEKLIRRHNNQPKCTKNV 205

Query: 176  DPSMFLNFAMHSVRAEACDCPPSHQPSKEKQTASAIL-RGPFGQREGPLDXXXXXXXXXX 234
            D S+FLNFAMHSVR EACD PP+H+   EK+++S+ L  G       P D          
Sbjct: 206  DESLFLNFAMHSVRMEACDIPPTHREHTEKRSSSSALPAGENSHDNAPDDR--------- 256

Query: 235  XYLDQNISKSRKTSHGARESLYWGARENKQKVKGSDPVKKTTHVGDKPRCDVQESEKSRR 294
              LD+    S+++    ++      +++K+   G +PV+K + + +K +    +SEK  R
Sbjct: 257  --LDKPAGSSKQSK---QDGFICEKKKSKKNKAGVEPVRKNSQISEKIKSS-GDSEKHSR 310

Query: 295  VGNNGFRKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLHLWDVSRQVTPLNWLEAWLDNI 354
             G+N F +V FWQFHNF MLLGSDLL+FSNEKY+AVSLHLWDVS +VTPL WLEAWLDN+
Sbjct: 311  GGSNEFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVSEKVTPLTWLEAWLDNV 370

Query: 355  MASVPELAICYHQNGVVQGYELLKNDDIFLLKGVSDDGTPAFHPQVVQQNGLAVLRFLQD 414
            MASVPELAICYH+NG+VQGYELLK DDIF+LKG+S+DGTPAFHP VVQQNGLAVLRFLQ 
Sbjct: 371  MASVPELAICYHENGIVQGYELLKTDDIFILKGISEDGTPAFHPHVVQQNGLAVLRFLQS 430

Query: 415  NCKQDPGAYWLYKGAEEDVIQLYDLSILPQNHTAGDHRSTCGPMSSLMKKGRKESLFSLG 474
            NCK+DPGAYWLYK A ED +QL+DLSI+ +NH++  H  +     SL+  GR +S+FSLG
Sbjct: 431  NCKEDPGAYWLYKSAGEDELQLFDLSIISKNHSSSVHNDSASS-PSLIHSGRSDSMFSLG 489

Query: 475  TLLYRVAHRMSLSKVPSNRAKCAKFFKKCLDFLSEQDHLVVRAYAHEQFARLILRCYXXX 534
             LLYRV HR+SLS VP++R KCA+F  +CL+ L   DHLVVRAYAHEQFARLIL      
Sbjct: 490  NLLYRVGHRLSLSVVPNDRNKCARFLTQCLNCLDAPDHLVVRAYAHEQFARLILNSDEES 549

Query: 535  XXXXXXXXXXXXXXXXDLDESPDLSLENLPSKQNEVLTEISEEPATLDGMLE-----CSR 589
                            DL+E   L    +   +NE +T  SE+  T D  +       S 
Sbjct: 550  DLTFESNGVQREVKITDLEEEA-LDPVTIADHENETVT-FSEDKFTEDHSVSNIVPLVSV 607

Query: 590  SGSSQASNSLVDPGHVDISPVSSATKG-------DVTVDSLVMCQSGTQVSRTIADAISS 642
                +A+ SL        SP S  T+G       D ++D   +CQ+ T         ISS
Sbjct: 608  RPKLEANVSLCKELLHSDSPDSHDTEGSAVNSSSDTSLDLGTLCQTTTS-------PISS 660

Query: 643  KLAAIHHVSQAIKSLRWNRQLQNTQDDCVGNADTIWEKPVDFSLCRCGDIDCIEVCDIRE 702
            KL+AI+HVSQAIKSLRW RQLQ+++       D   +   DFS C CGD DCIEVCDIR+
Sbjct: 661  KLSAINHVSQAIKSLRWTRQLQSSE-----QVDAFHDILPDFSKCSCGDPDCIEVCDIRK 715

Query: 703  WLPKSKMDHKLWKLVLLLGESYLALGEAYKNDGQLRRTLKVVELACLVYGSMPKNLEGEQ 762
            WLP SK+D KLW LVLLLGESYL+LGEAYK D QL + L  VELAC +YGSMP+  E   
Sbjct: 716  WLPTSKLDRKLWNLVLLLGESYLSLGEAYKEDKQLHQALNTVELACSIYGSMPQKFEETL 775

Query: 763  FISSMSNSSLSVEDGDLKANLVLDEADYFKNAKCFNYDVSAGQLPPNYLFWVKAWMLVGD 822
            F+SSM N SLS++    +   V D       AK    D+S  +L    LFW K WMLVGD
Sbjct: 776  FVSSM-NKSLSLQSKFHERTQVED-----LEAKSGPSDISVEELSSTRLFWAKVWMLVGD 829

Query: 823  VYAEYHRLRGQQAPVLPEQKPDGEVRMSNEVAMEVKRLKRKLGKDKQNCGTCSLINCSCQ 882
            +Y ++H L+GQ+     +   +  ++M +EV  EV+RLK+KL +  QNC +CSL+NCSC+
Sbjct: 830  IYVQFHILKGQELSRRTKGTTN-HLKMQSEVVKEVQRLKKKLTEYSQNCASCSLVNCSCK 888

Query: 883  X--XXXXXXXXXXXXXXXXXTLYGRKKNKKSSGRNFHSQSRETKENPSTQDSMGDSEKRS 940
                                  + RK N+K   +N  S+                     
Sbjct: 889  SDRASSGSSASSSNGSSARTVPHSRKHNRKLQSKNVASKVSR------------------ 930

Query: 941  VSNVEIDTNNYTMENQSRNNDGDPDKSKEDVSSVRV---------------GGIFKFLGG 985
              +VE +  N+ +EN+SR    + D S E   +VR+               GGIFK+L G
Sbjct: 931  --DVEDERVNFKVENKSRKE--EEDTSGETKGAVRLEQNESNSKETPGAKKGGIFKYLKG 986

Query: 986  PEPGDVEYNLHSAIHCYDAAKGVIFAFPVPLAEKSTILKKRGWAFNELGCHRLESRNLGN 1045
             +  D E NL +A++CY+  +  +   P   +E  ++L+K+GW  NELG +RL S+ L  
Sbjct: 987  SKTDDAESNLLAALNCYEETRRALQELPSNCSEFQSVLRKKGWVCNELGRNRLGSKELNK 1046

Query: 1046 AEIAFADAIKAFQEVADHTNVILINCNLGHGRRALAEQFVSRIDEFQKYDFPQDAYMQSF 1105
            AE AFADAI AF+EV DHTNVILINCNLGHGRRALAE+ V +I+  + +   ++AY ++ 
Sbjct: 1047 AEDAFADAIVAFKEVCDHTNVILINCNLGHGRRALAEEMVPKIEALELHRAFENAYQKAL 1106

Query: 1106 KSAKSEYFQAINYYTAAKRQLTYADNEVDKVLYN---EVYTQYAHTHLRLGMLLARESFL 1162
             +AK EY +++ YY AAK +L+ A  E   V  N   EVYTQ A+T+LR GMLLA E   
Sbjct: 1107 GTAKLEYSKSLRYYMAAKTELSVATAEASSVSDNLKVEVYTQLANTYLRFGMLLANEDTT 1166

Query: 1163 TDSYEGGFVDESSN-------------RTVLEISASDAFREALSTYESLGEHRKQEAAFG 1209
              + E   + E+++             R VL  SASDA REAL+ YESLGE RKQEAAF 
Sbjct: 1167 AAAREQKNILENTHDSSSDGKSSDLRKREVL--SASDAIREALALYESLGEIRKQEAAFA 1224

Query: 1210 HFQLACYQRDLCLRFLDLIDKEVKQKNEDKYRQKAKWYGSLAEKNWQRALEFYGPKTHST 1269
            + QLA Y +D CL FL+   +   +K E    Q+AK Y  LA++NWQ++++FYGP+   +
Sbjct: 1225 YLQLARYHKDCCLGFLETERQGSPRKPESNVIQRAKQYALLADRNWQKSMDFYGPENLPS 1284

Query: 1270 MFLNILMAQSALSVNLSDSFHSSVMLENALVHLLDGRHVVEANDEYSNDLDLDIKPKFWS 1329
            MFL IL+ +SALS  +S+ +  + MLE+AL  LL+GRH+ +   E     D  +  KF +
Sbjct: 1285 MFLTILIERSALSSTVSNFWQLNFMLESALSRLLEGRHISKTYAESLRTEDPKLYTKFMA 1344

Query: 1330 QLQRLLKSMLAAARPAASVGQANASNSRGDTAKLKEMYRLSLKSTSLGQLHALHKIWVS 1388
            QLQ +LK MLA + P+    ++      GD+ KL+E+Y+ SLKST+L  L+A+H +W S
Sbjct: 1345 QLQMVLKRMLALSLPSEGANKSQTCGRSGDSGKLRELYKTSLKSTNLCDLNAMHALWTS 1403



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 29,303,323
Number of extensions: 1223310
Number of successful extensions: 3421
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3409
Number of HSP's successfully gapped: 1
Length of query: 1388
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1277
Effective length of database: 8,063,393
Effective search space: 10296952861
Effective search space used: 10296952861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)