BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0869300 Os01g0869300|AK059347
(368 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G31880.1 | chr4:15419435-15423939 REVERSE LENGTH=874 66 3e-11
AT5G10950.1 | chr5:3459557-3461632 REVERSE LENGTH=396 63 3e-10
AT1G80810.2 | chr1:30365575-30368898 FORWARD LENGTH=775 60 2e-09
AT5G47690.3 | chr5:19317899-19327014 FORWARD LENGTH=1608 59 4e-09
AT1G77600.3 | chr1:29152890-29162156 REVERSE LENGTH=1425 58 6e-09
>AT4G31880.1 | chr4:15419435-15423939 REVERSE LENGTH=874
Length = 873
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 198 KDTGTVLVGCRIRLWSARDMCYICGTVETYDQSNGFHKIIYENGDKELVRLECQKW 253
K +G LVG RI++W D Y G VE+YD + H +IY++GD+E++ L+ QKW
Sbjct: 602 KASGESLVGSRIKVWWPMDQAYYKGVVESYDAAKKKHLVIYDDGDQEILYLKNQKW 657
>AT5G10950.1 | chr5:3459557-3461632 REVERSE LENGTH=396
Length = 395
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 201 GTVLVGCRIRLWSARDMCYICGTVETYDQSNGFHKIIYENGDKELVRLECQKWEFI 256
G LVG RIR+W D + G V++Y S H++ YE+GDKE + L+ ++WE I
Sbjct: 34 GEALVGSRIRVWWPMDSKFYKGVVDSYVSSKKKHRVFYEDGDKETLDLKKERWELI 89
>AT1G80810.2 | chr1:30365575-30368898 FORWARD LENGTH=775
Length = 774
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 184 ETDHNYSNRRETVMKDT----GTVLVGCRIRLWSARDMCYICGTVETYDQSNGFHKIIYE 239
ET ++ RR TV K+ G LVG R+ +W D + G +++Y H++IY
Sbjct: 481 ETPKSHPTRRRTVRKEVSDGFGEDLVGKRVNIWWPLDKTFYEGVIDSYCTRKKMHRVIYS 540
Query: 240 NGDKELVRLECQKWEFISDTISTVK-----DIPNSHPRCCSFKRVRGKGS 284
+GD E + L ++WE + D S + D+P S P +R + K S
Sbjct: 541 DGDSEELNLTEERWELLEDDTSADEQDKEIDLPESIPLSDIMQRQKVKKS 590
>AT5G47690.3 | chr5:19317899-19327014 FORWARD LENGTH=1608
Length = 1607
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 204 LVGCRIRLWSARDMCYICGTVETYDQSNGFHKIIYENGDKELVRLECQKWEFI 256
L+GCRI +W D + GTV++YD + H I+YE+GD E++ L+ ++WE I
Sbjct: 1368 LIGCRIEVWWPMDKRFYEGTVKSYDSTKQRHVILYEDGDVEVLNLKKEQWELI 1420
>AT1G77600.3 | chr1:29152890-29162156 REVERSE LENGTH=1425
Length = 1424
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 44/265 (16%)
Query: 17 THKLHILSRIGLLIVKELDKHCKMS-DSPRHFPLPSSYFRVSGSARKTDR---------- 65
T +LHIL+ IG V L+ S +PR LPSS + ++ ++
Sbjct: 1080 TPRLHILADIGYSAVNILNSIVVTSPQAPRSILLPSSLYSLTSITDNQNKAKSRTRNALE 1139
Query: 66 ---------ILGAHGPVHPDDTKCSDNAERVSTE--VAPDKEARSSLSNIVGQNASCHDK 114
I + +H D +C ++ V +E V P ++I G + +
Sbjct: 1140 QSFIERIVHIFQSQISMH--DQRCQKDSLAVGSEDKVLPPLLGNQIETSITGSTEASQNN 1197
Query: 115 GKRNKKQDQTTNHSLEKEKVSSCGSAGTKLSSPASLGLAKEADSIDSISLLENQNR--PE 172
+ ++K+ H SC S + +S I LE E
Sbjct: 1198 TRCSRKRTHLGEHI-------SCNSLSLR-----------TVESEIPIKKLERHTTCAKE 1239
Query: 173 SRSSTGETRASETDHNYSNRRETVMKDTGTVLVGCRIRLWSARDMCYICGTVETYDQSNG 232
S ++ + + + H+ + + G ++G RI+L S D C+ GTVE ++ +
Sbjct: 1240 SVKASVSNKITSSKHSGVVSALKDISNHGEAIIGQRIKLLSPTDGCFYPGTVEKFNSKSN 1299
Query: 233 FHKIIYENGDKELVRLECQKWEFIS 257
HKII++NGD ELV L+ + WE +S
Sbjct: 1300 SHKIIFDNGDVELVCLDSESWETLS 1324
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,085,041
Number of extensions: 354564
Number of successful extensions: 966
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 966
Number of HSP's successfully gapped: 6
Length of query: 368
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 268
Effective length of database: 8,364,969
Effective search space: 2241811692
Effective search space used: 2241811692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)