BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0867900 Os01g0867900|AK061366
(259 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43130.1 | chr1:16228661-16231158 REVERSE LENGTH=262 374 e-104
AT2G20120.1 | chr2:8687568-8689321 REVERSE LENGTH=269 333 7e-92
AT2G20130.1 | chr2:8690614-8692234 REVERSE LENGTH=257 332 1e-91
AT2G18460.1 | chr2:8001320-8002854 FORWARD LENGTH=275 315 2e-86
>AT1G43130.1 | chr1:16228661-16231158 REVERSE LENGTH=262
Length = 261
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/263 (71%), Positives = 214/263 (81%), Gaps = 8/263 (3%)
Query: 1 MAEKEESTSIPLSQA-AEAVDPEDPAKXXXXXXXXXXXXXKACCAVLQSWVSRKFMTGCV 59
MAE +E+T+ LSQ DP+D K KAC VLQSWVS+KFMTG V
Sbjct: 1 MAEGKEATTSSLSQGLTPHQDPDDAPKSPPNSPNSSTR--KACYGVLQSWVSKKFMTGFV 58
Query: 60 VLFPVAVTFFITWWFIQFVDGFFSPLYAKLGIDIFGLGFLTSLVFIFLVGIFVSSWVGST 119
VLFPVAVTF ITWWFIQFVDGFFSP+Y LG+DIFGLGF+TS++F F VGIF SSW+GST
Sbjct: 59 VLFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGST 118
Query: 120 IFWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITST 179
+FW+GE FI++MPFV+HIYSASKQ+STAISPDQNTTAFKEVAIIRHPRIGEYAFGFITS+
Sbjct: 119 VFWLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSS 178
Query: 180 VVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMPQVI 239
V LQTD G+EELCSVYVPTNHLYIGD+FLV+SEEIIRPNLSIREGIEIIVS GMTMPQVI
Sbjct: 179 VTLQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVI 238
Query: 240 ASLEPTPRK-----SQNIRLNRI 257
+ ++ T + S + LNR+
Sbjct: 239 SHVDRTTNRTPHQHSLRVPLNRL 261
>AT2G20120.1 | chr2:8687568-8689321 REVERSE LENGTH=269
Length = 268
Score = 333 bits (853), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 146/198 (73%), Positives = 182/198 (91%)
Query: 46 LQSWVSRKFMTGCVVLFPVAVTFFITWWFIQFVDGFFSPLYAKLGIDIFGLGFLTSLVFI 105
++ W S+KFMTGCV+L P+A+TF+ITWWFI FVDGFFSP+YA+LGI++FG GFLTS+ FI
Sbjct: 59 IRGWASKKFMTGCVILLPIAITFYITWWFIHFVDGFFSPIYAQLGINVFGFGFLTSIAFI 118
Query: 106 FLVGIFVSSWVGSTIFWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRH 165
FLVG+F+SSW+G+++ +GEWFIK+MPFVRHIY+ASKQ+STAISPDQNT AFKEVAIIRH
Sbjct: 119 FLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRH 178
Query: 166 PRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGI 225
PR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGD+ LVNS ++IRPNLS+REGI
Sbjct: 179 PRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDLLLVNSNDVIRPNLSVREGI 238
Query: 226 EIIVSGGMTMPQVIASLE 243
EI+VSGGM+MPQ++++++
Sbjct: 239 EIVVSGGMSMPQILSTVD 256
>AT2G20130.1 | chr2:8690614-8692234 REVERSE LENGTH=257
Length = 256
Score = 332 bits (851), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 149/198 (75%), Positives = 180/198 (90%)
Query: 46 LQSWVSRKFMTGCVVLFPVAVTFFITWWFIQFVDGFFSPLYAKLGIDIFGLGFLTSLVFI 105
++ W S+KFMTGCV+L P+AVTF+ TWWFI FVDGFFSP+YA LGI+IFG GFLTS+ FI
Sbjct: 49 IRGWASKKFMTGCVILLPIAVTFYTTWWFIHFVDGFFSPIYALLGINIFGFGFLTSIAFI 108
Query: 106 FLVGIFVSSWVGSTIFWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRH 165
FLVG+F+SSW+G+++ +GEWFIK+MPFVRHIY+ASKQ+STAISPDQNT AFKEVAIIRH
Sbjct: 109 FLVGVFMSSWLGASVLNLGEWFIKRMPFVRHIYNASKQISTAISPDQNTQAFKEVAIIRH 168
Query: 166 PRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGI 225
PR+GEYAFGFITSTVVLQ +EELC VYVPTNHLYIGDI LVNS ++IRPNLS+REGI
Sbjct: 169 PRVGEYAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGI 228
Query: 226 EIIVSGGMTMPQVIASLE 243
EI+VSGGM+MPQ++++L+
Sbjct: 229 EIVVSGGMSMPQILSTLD 246
>AT2G18460.1 | chr2:8001320-8002854 FORWARD LENGTH=275
Length = 274
Score = 315 bits (807), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 139/204 (68%), Positives = 180/204 (88%)
Query: 40 KACCAVLQSWVSRKFMTGCVVLFPVAVTFFITWWFIQFVDGFFSPLYAKLGIDIFGLGFL 99
+A V++SW S+KFMTGCV+L P+AVTF+ TWWFI FVDGFFSP+Y LGI++FGLGF+
Sbjct: 43 EAIYKVIRSWASKKFMTGCVILLPIAVTFYFTWWFIHFVDGFFSPIYTHLGINMFGLGFV 102
Query: 100 TSLVFIFLVGIFVSSWVGSTIFWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKE 159
TS+ FIF+VG+F+SSW+G+++ +GEWFIKKMP V +IYSASKQ+S AISPDQ++ AFKE
Sbjct: 103 TSITFIFMVGVFMSSWLGASVLSIGEWFIKKMPLVSYIYSASKQISGAISPDQSSGAFKE 162
Query: 160 VAIIRHPRIGEYAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNL 219
VAIIRHP +GEYAFGFITSTV+L+ G EELC VYVPTNHLY+GDIFL++S++IIRPNL
Sbjct: 163 VAIIRHPHMGEYAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNL 222
Query: 220 SIREGIEIIVSGGMTMPQVIASLE 243
S+REGIEI++SGGM++P ++ +L+
Sbjct: 223 SVREGIEIVISGGMSIPHMLTTLD 246
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,248,995
Number of extensions: 206817
Number of successful extensions: 635
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 635
Number of HSP's successfully gapped: 4
Length of query: 259
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 163
Effective length of database: 8,474,633
Effective search space: 1381365179
Effective search space used: 1381365179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)