BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0866400 Os01g0866400|AB007193
(339 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43670.1 | chr1:16468184-16470347 FORWARD LENGTH=342 598 e-171
AT3G54050.1 | chr3:20016951-20018527 FORWARD LENGTH=418 340 5e-94
AT5G64380.1 | chr5:25741342-25743024 FORWARD LENGTH=405 239 1e-63
AT3G55800.1 | chr3:20709640-20711421 FORWARD LENGTH=394 94 9e-20
>AT1G43670.1 | chr1:16468184-16470347 FORWARD LENGTH=342
Length = 341
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/339 (84%), Positives = 308/339 (90%)
Query: 1 MDHEADAYRTDLMTITRYVLNEQSRNPEARGDLTILLSHIVLGCKFVASAVNKAGLAKLI 60
MDH ADA+RTDLMTITR+VLNEQS+ PE+RGD TILLSHIVLGCKFV SAVNKAGLAKLI
Sbjct: 1 MDHAADAHRTDLMTITRFVLNEQSKYPESRGDFTILLSHIVLGCKFVCSAVNKAGLAKLI 60
Query: 61 GLAGETNVQAKEQKKLDVLSNEVFVKALVSSGRTCVLVSEEDEEATFVDPALRGKYCVCF 120
GLAGETN+Q +EQKKLDVLSN+VFV ALVSSGRT VLVSEEDEEATFV+P+ RGKYCV F
Sbjct: 61 GLAGETNIQGEEQKKLDVLSNDVFVNALVSSGRTSVLVSEEDEEATFVEPSKRGKYCVVF 120
Query: 121 DPLDGSSNIDCGVSIGTIFGIYMIKDKENVTLEDVLQPGKNMVAAGYCMYGSSCTLVLST 180
DPLDGSSNIDCGVSIGTIFGIY + + T DVL+PG MVAAGYCMYGSSC LVLST
Sbjct: 121 DPLDGSSNIDCGVSIGTIFGIYTLDHTDEPTTADVLKPGNEMVAAGYCMYGSSCMLVLST 180
Query: 181 GNGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDEPTAKFVEKCKFPKDGS 240
G GV+GFTLDPSLGEFILTHPDIKIP KG IYSVNEGNA+NWD PT K+VEKCKFPKDGS
Sbjct: 181 GTGVHGFTLDPSLGEFILTHPDIKIPNKGNIYSVNEGNAQNWDGPTTKYVEKCKFPKDGS 240
Query: 241 SPKSLRYIGSMVADVHRTLLYGGVFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQSFT 300
KSLRY+GSMVADVHRTLLYGG+FLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQ+FT
Sbjct: 241 PAKSLRYVGSMVADVHRTLLYGGIFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAFT 300
Query: 301 GKERALDLVPTKIHERSPIFLGSFEDVEEIKGLYAAQAK 339
GK+RALDLVP KIHERSPIFLGS++DVEEIK LYA + K
Sbjct: 301 GKKRALDLVPEKIHERSPIFLGSYDDVEEIKALYAEEEK 339
>AT3G54050.1 | chr3:20016951-20018527 FORWARD LENGTH=418
Length = 417
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 167/336 (49%), Positives = 230/336 (68%), Gaps = 16/336 (4%)
Query: 11 DLMTITRYVLNEQSRNPEARGDLTILLSHIVLGCKFVASAVNKAGLAKLIGLAGETNVQA 70
+L T+T ++L ++ + E +LTI++S I L CK +AS V +AG++ L G+ G N+Q
Sbjct: 79 ELQTLTGWLLRQEMKG-EIDAELTIVMSSISLACKQIASLVQRAGISNLTGVQGAVNIQG 137
Query: 71 KEQKKLDVLSNEVFVKALVSSGRTCVLVSEEDEEATFVDPALRGKYCVCFDPLDGSSNID 130
++QKKLDV+SNEVF L SSGRT ++ SEE++ V+ + G Y V FDPLDGSSNID
Sbjct: 138 EDQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYVVVFDPLDGSSNID 197
Query: 131 CGVSIGTIFGIY------MIKDKENVT---------LEDVLQPGKNMVAAGYCMYGSSCT 175
VS G+IFGIY ++ D ++++ + +V QPG N++AAGYCMY SS
Sbjct: 198 AAVSTGSIFGIYSPNDECIVDDSDDISALGSEEQRCIVNVCQPGNNLLAAGYCMYSSSVI 257
Query: 176 LVLSTGNGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDEPTAKFVEKCKF 235
VL+ G GV FTLDP GEF+LT +I+IPK G+IYS NEGN + WD+ K+++ K
Sbjct: 258 FVLTLGKGVFSFTLDPMYGEFVLTQENIEIPKAGRIYSFNEGNYQMWDDKLKKYIDDLKD 317
Query: 236 PKDGSSPKSLRYIGSMVADVHRTLLYGGVFLYPADKKSPNGKLRVLYEVFPMSFLMEQAG 295
P P S RYIGS+V D HRTLLYGG++ YP D KS NGKLR+LYE PMSF++EQAG
Sbjct: 318 PGPTGKPYSARYIGSLVGDFHRTLLYGGIYGYPRDAKSKNGKLRLLYECAPMSFIVEQAG 377
Query: 296 GQSFTGKERALDLVPTKIHERSPIFLGSFEDVEEIK 331
G+ G R LD+ PT+IH+R P+++GS E+VE+++
Sbjct: 378 GKGSDGHSRVLDIQPTEIHQRVPLYIGSTEEVEKLE 413
>AT5G64380.1 | chr5:25741342-25743024 FORWARD LENGTH=405
Length = 404
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 194/311 (62%), Gaps = 21/311 (6%)
Query: 32 DLTILLSHIVLGCKFVASAVN---KAGLAKLIGLAGETNVQAKEQKKLDVLSNEVFVKAL 88
DL +LL H+ CK +AS V + L KL + + K LD++SN++ + +L
Sbjct: 89 DLVVLLYHLQHACKRIASLVASPFNSSLGKL-SVNSSSGSDRDAPKPLDIVSNDIVLSSL 147
Query: 89 VSSGRTCVLVSEEDEEATFVDPALRGKYCVCFDPLDGSSNIDCGVSIGTIFGIY-MIKDK 147
+SG+ V+ SEE++ T++ G Y V DPLDGS NID + GTIFGIY + +
Sbjct: 148 RNSGKVAVMASEENDSPTWIKDD--GPYVVVVDPLDGSRNIDASIPTGTIFGIYNRLVEL 205
Query: 148 ENVTLE-----DVLQPGKNMVAAGYCMYGSSCTLVLSTGNGVNGFTLDPSLGEFILTHPD 202
+++ +E + LQ G +VA+GY +Y S+ ++ G+G + FTLD S GEF+LTH +
Sbjct: 206 DHLPVEEKAELNSLQRGSRLVASGYVLYSSATIFCVTLGSGTHAFTLDHSTGEFVLTHQN 265
Query: 203 IKIPKKGKIYSVNEGNAKNWDEPTAKFVEKCKFPKDGSSPK--SLRYIGSMVADVHRTLL 260
IKIP +G+IYSVN+ +W E K+++ + K G +PK S RYI S+VAD+HRTLL
Sbjct: 266 IKIPTRGQIYSVNDARYFDWPEGLRKYIDTVRQGK-GQNPKKYSARYICSLVADLHRTLL 324
Query: 261 YGGVFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQSFTGKERALDLVPTKIHERSPIF 320
YGGV + P D LR++YE P++FL+EQAGG+S GK L + P K+H+R P+F
Sbjct: 325 YGGVAMNPRD------HLRLVYEGNPLAFLVEQAGGKSSDGKRGILSIQPVKLHQRLPLF 378
Query: 321 LGSFEDVEEIK 331
LGS EDV E++
Sbjct: 379 LGSLEDVAELE 389
>AT3G55800.1 | chr3:20709640-20711421 FORWARD LENGTH=394
Length = 393
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 136/312 (43%), Gaps = 51/312 (16%)
Query: 45 KFVASAVNKAGLAKLIGLAGET-------------------NVQAKEQKKLDVLSNEVFV 85
+F+A A GL L+ GE N EQ +D+L++++
Sbjct: 82 EFLAQATPDKGLRTLLMCMGEALRTIAFKVRTASCGGTACVNSFGDEQLAVDMLADKLLF 141
Query: 86 KALVSSGRTCVLVSEEDEEATFVDPALRGKYCVCFDPLDGSSNIDCGVSIGTIFGIYMIK 145
+AL S SEE E + + G + V FDPLDGSS +D ++GTIFG++
Sbjct: 142 EALQYSHVCKYACSEEVPELQDMGGPVEGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGD 201
Query: 146 DKENVTLEDVLQPGKNMVAAGYCMYGSSCTLVLSTGNGVNGFTLDPSLGEFILTH----- 200
+T G + VAA +YG T VL+ V GF P EF+L
Sbjct: 202 KLTGIT-------GGDQVAAAMGIYGPRTTYVLA----VKGF---PGTHEFLLLDEGKWQ 247
Query: 201 --PDIKIPKKGKIYSVNEGNAKNWDEPTAKFVE---KCKFPKDGSSPKSLRYIGSMVADV 255
+ +GK++S A + +K ++ K K+ +LRY G MV DV
Sbjct: 248 HVKETTEIAEGKMFSPGNLRATFDNSEYSKLIDYYVKEKY--------TLRYTGGMVPDV 299
Query: 256 HRTLLYGGVFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQSFTGKERALDLVPTKIHE 315
++ ++ + KLR+L+EV P+ L+E AGG S G + LD + +
Sbjct: 300 NQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGLLIENAGGFSSDGHKSVLDKTIINLDD 359
Query: 316 RSPIFLGSFEDV 327
R+ + GS ++
Sbjct: 360 RTQVAYGSKNEI 371
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,704,765
Number of extensions: 340357
Number of successful extensions: 735
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 240
Effective length of database: 8,392,385
Effective search space: 2014172400
Effective search space used: 2014172400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)