BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0863400 Os01g0863400|AK068967
         (298 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32680.1  | chr4:15763462-15765039 REVERSE LENGTH=283           70   1e-12
AT1G52343.1  | chr1:19494226-19495718 REVERSE LENGTH=250           50   2e-06

>AT4G32680.1 | chr4:15763462-15765039 REVERSE LENGTH=283
          Length = 282

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 6/119 (5%)

Query: 180 PHEITQAISATEYNRFLASVIIGFLVVLSNWGLDVGGTITKVLVATRPILFLIVTNITIV 239
           P  I  AI A+EY R   ++ I  +V+LS+ G    G I    V+ RP+  L++T+ TIV
Sbjct: 158 PKHIGAAIDASEYARMFTALAIALVVILSHLGFSSLGNI----VSFRPVFLLVLTDATIV 213

Query: 240 F--TLLMENKDPNVRGRPAGSNLGSADNLGQMLEIGLLLQKALSTLLIDCSVCAVIMIC 296
               LL    D +       S  G  D +G  LE  ++++K +  LL+D S+ AVI+IC
Sbjct: 214 LGRVLLSHRGDSSSASGTVMSGQGIVDQVGNALETVMMVKKIMDALLMDFSLYAVILIC 272



>AT1G52343.1 | chr1:19494226-19495718 REVERSE LENGTH=250
          Length = 249

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 19/137 (13%)

Query: 173 KEILNFAPHEITQAISATEYNRFLASVIIG-FLVVLSNWGLDVGGTITKVLVATRPILFL 231
           + I  F+  ++  +I ++E  R L+S+ I  F+V+L    +    TI    +A RP+  L
Sbjct: 115 RPICFFSSKKLNASIISSERTRSLSSLTIAAFVVLLPRLNITSSNTI----LALRPLWLL 170

Query: 232 IVTNITIVFTLLM---------ENKDPNVRGRPA--GSNLGSADNLGQMLEIGLLLQKAL 280
           I+T+  IV + L             + + +GR    G N   A+ L   LE G+++ +AL
Sbjct: 171 ILTDCAIVMSHLTTEASGGGLSHEMEEDGKGRDGNNGENWSDAERL---LERGVVVYQAL 227

Query: 281 STLLIDCSVCAVIMICF 297
             + IDCS+  V+++ F
Sbjct: 228 RGMFIDCSLYMVVVVIF 244



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,199,595
Number of extensions: 206007
Number of successful extensions: 859
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 2
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)