BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0862000 Os01g0862000|AK072680
         (186 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52570.1  | chr3:19501145-19502795 FORWARD LENGTH=336          169   1e-42
AT4G10030.1  | chr4:6270490-6273098 REVERSE LENGTH=381             85   2e-17

>AT3G52570.1 | chr3:19501145-19502795 FORWARD LENGTH=336
          Length = 335

 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/136 (66%), Positives = 112/136 (82%), Gaps = 1/136 (0%)

Query: 39  ASNQTETLAFDEIQLSPEKPSTATAFVLHGLLGSGRNWRSFSRALASELRDRSPSDEWRM 98
           +S   +TLA++E++ S ++ S +TA +LHGLLGSGRNWRSFSR+LAS L   S SD W+M
Sbjct: 32  SSRSLQTLAYEEVRTSGDRESESTALILHGLLGSGRNWRSFSRSLASSLSVSSASD-WKM 90

Query: 99  VLVDLRNHGRSAGIKGLRPPHDMSTAARDLADLVKARGWAWPDVVVGHSMGGKVALDFAE 158
           +LVDLRNHGRSA ++GL PPHD+  +A+DLADLVKA GW WPDVV+GHS+GGKVAL F E
Sbjct: 91  ILVDLRNHGRSAEVEGLNPPHDLVNSAKDLADLVKASGWNWPDVVIGHSLGGKVALQFME 150

Query: 159 SCSRGDYGESADLPKQ 174
           SC+RGD+GESA  PKQ
Sbjct: 151 SCARGDFGESASPPKQ 166



>AT4G10030.1 | chr4:6270490-6273098 REVERSE LENGTH=381
          Length = 380

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 17/138 (12%)

Query: 34  SVHSEASNQTETLAFDEIQLSPEK---------PSTATAFVLHGLLGSGRNWRSFSRALA 84
           S   + +     LA+D +Q +  K         P T TA +LHG+LGSG+NW +F+R LA
Sbjct: 71  STSKDVAEPPRVLAYDLVQGALVKWRWKDDKSVPDTPTAVLLHGILGSGKNWGTFARRLA 130

Query: 85  SELRDRSPSDEWRMVLVDLRNHGRSAGIKGLRPPHDMSTAARDLADLVKARGWAWPDVVV 144
            E     P+  W+ +LVDLR HG S  +K  R PH ++T A D+  LV       P V+V
Sbjct: 131 HEF----PT--WQFLLVDLRCHGDSTSLKK-RGPHSVATTASDVLKLVGQLRLT-PRVLV 182

Query: 145 GHSMGGKVALDFAESCSR 162
           GHS GGKV L   E  ++
Sbjct: 183 GHSFGGKVVLSMVEQAAK 200



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,687,925
Number of extensions: 141116
Number of successful extensions: 398
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 2
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)