BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0861900 Os01g0861900|AK105529
         (490 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52610.1  | chr3:19510513-19512547 FORWARD LENGTH=476          287   1e-77

>AT3G52610.1 | chr3:19510513-19512547 FORWARD LENGTH=476
          Length = 475

 Score =  287 bits (734), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 150/365 (41%), Positives = 218/365 (59%), Gaps = 12/365 (3%)

Query: 119 LLEHELNRNPWXXXXXXXXXSEHEPDAPPVLFATLYELPPPAGGGSALFVRIHTAACDRA 178
           +LEHE+N+N W                  V   +LY+L    G    L  R++TAA DR 
Sbjct: 115 ILEHEMNKNTWINPHRWIKSESR------VFIVSLYDLTDD-GEQRILTFRLNTAAVDRT 167

Query: 179 ASASLVRXXXXXXXXXXXXXXXXXXXXXXXVR--ASLEERIPQRDSWKPFWARGLDMVGY 236
           A+ +L+R                       V    ++EE IP     KPFWARG+D++GY
Sbjct: 168 AAVTLLREFMKETAADGFGNGPVVAATETAVGLGKAIEELIPSGKGDKPFWARGIDVLGY 227

Query: 237 SINGLRTSTLPF-EVTGTERSTQMLRLGFDRDETTRLLDACKQNGVKXXXXXXXXXXXXX 295
           S+N  R S L F +   + R +Q++RL  DRD+T +L+  CK  G+K             
Sbjct: 228 SLNAFRFSNLNFVDAENSNRRSQLVRLKLDRDQTLKLVAGCKARGLKLWAALASSALIAA 287

Query: 296 RQSKLQLASNQQETYSIATLINCRKFLEPALDDHNVGFYHSAITNTHAIHGGEELWELAK 355
             SK  L   Q E Y++ TL +CR  LEP L  ++ GFYH+ I +TH + G E+LW+LAK
Sbjct: 288 YSSK-NLPPYQGEKYAVVTLSDCRSILEPPLTSNDFGFYHAGILHTHDLTGEEKLWDLAK 346

Query: 356 RCQDSYTNAKNNKKHLTDIADLNFLMCRAIENPQLTTGSALRTAVVSVFEEPVVYDLSDL 415
           RC DS+T++KN+ K  TD++DLNFLMC+AIENP LT  S+LRTA +S+FE+PV+ +  + 
Sbjct: 347 RCYDSFTSSKNSNKQFTDMSDLNFLMCKAIENPNLTPSSSLRTAFISIFEDPVIDESPEP 406

Query: 416 Q-SKAGVEEFVCCATVHGVGPSIGLFDSIRDGQLEFACMYPCPLHSRKQMQEILNKVKQI 474
           + +  GV++++ CA++HGVGPS+ +FD++RDG+L+ A +YP PLHSR+QM  ++  +K I
Sbjct: 407 ELASLGVQDYIGCASIHGVGPSVAVFDALRDGKLDCAFVYPSPLHSREQMDGLIQHMKTI 466

Query: 475 LHEGS 479
           L EGS
Sbjct: 467 LLEGS 471



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,763,643
Number of extensions: 268248
Number of successful extensions: 502
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 497
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,282,721
Effective search space: 3205413027
Effective search space used: 3205413027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)