BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0860500 Os01g0860500|AK058878
         (305 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24090.1  | chr5:8143805-8145153 REVERSE LENGTH=303            333   7e-92

>AT5G24090.1 | chr5:8143805-8145153 REVERSE LENGTH=303
          Length = 302

 Score =  333 bits (854), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 162/272 (59%), Positives = 195/272 (71%), Gaps = 5/272 (1%)

Query: 35  YWGQNGNEGTLAQTCATGNYRFVIVAFLPVFGKGQTPVLNLAGHCDPASNGCTGVGADIK 94
           YWGQNGNEG L+ TCATG Y +V VAFL  FG GQTP LNLAGHC+PA+N CT  G+ +K
Sbjct: 35  YWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHFGSQVK 94

Query: 95  SCQSLGIKVMFSIGGGVGNYGLSSRDDAKQVAAYLWNNYLGGTSPSRPLGDAVMDGIDFD 154
            CQS GIKVM S+GGG+GNY + SR+DAK +A YLWNN+LGG S SRPLGDAV+DGIDF+
Sbjct: 95  DCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSSRPLGDAVLDGIDFN 154

Query: 155 IESGGGMYWDDLARYLKAYSRQGSSKKPVYLTAAPQCPFPDASLGVALSTGLFDYVWVQF 214
           IE G   +WDDLAR L  +S +G   + +YLT APQCPFPD  +G AL+T  FDYVW+QF
Sbjct: 155 IELGSPQHWDDLARTLSKFSHRG---RKIYLTGAPQCPFPDRLMGSALNTKRFDYVWIQF 211

Query: 215 YNNPPCQYSSSNGVGNLASAWKQW-TSIPAGRVFLGLPAAAEAAGSGFVETSDXXXXXXX 273
           YNNPPC YSS N   NL  +W +W TSI A + FLGLPAA EAAGSG++           
Sbjct: 212 YNNPPCSYSSGN-TQNLFDSWNKWTTSIAAQKFFLGLPAAPEAAGSGYIPPDVLTSQILP 270

Query: 274 XXXXXXXYGGIMLWSRYYDGLTGYSDKVKSSV 305
                  YGG+MLWS+++D   GYS  + +SV
Sbjct: 271 TLKKSRKYGGVMLWSKFWDDKNGYSSSILASV 302



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,446,021
Number of extensions: 278533
Number of successful extensions: 549
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 207
Effective length of database: 8,419,801
Effective search space: 1742898807
Effective search space used: 1742898807
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)