BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0858900 Os01g0858900|AK107493
         (393 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08280.1  | chr1:2608408-2609604 FORWARD LENGTH=399            286   2e-77

>AT1G08280.1 | chr1:2608408-2609604 FORWARD LENGTH=399
          Length = 398

 Score =  286 bits (731), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 131/231 (56%), Positives = 164/231 (70%), Gaps = 6/231 (2%)

Query: 164 RIPSCAVVGNSGILLGASHGALIDSHAAVFRLNNARISGFAANVGAKTNLSFINSNVLHL 223
           R  SCAVVGNSG LL + +G LID H  V RLNNA+   F   VG+KTN+SFINSN+LH 
Sbjct: 173 RYLSCAVVGNSGTLLNSQYGDLIDKHEIVIRLNNAKTERFEKKVGSKTNISFINSNILHQ 232

Query: 224 CARRPNCFCHPYGDGVPILLYICQAAHFLDVASCNASSRSLHAASISVTDPRLDVLCARI 283
           C RR +C+CHPYG+ VPI++YICQ  H LD   C  S    H A + +TDPR DV+CARI
Sbjct: 233 CGRRESCYCHPYGETVPIVMYICQPIHVLDYTLCKPS----HRAPLLITDPRFDVMCARI 288

Query: 284 VKYYSLRRFVAE-TGRAAEEWSSTRDAAMFHYSSGMQAIMVAVGVCDRVSVFGFGKAADA 342
           VKYYS+++F+ E   +   +WS   + ++FHYSSGMQA+M+AVG+C++VSVFGFGK    
Sbjct: 289 VKYYSVKKFLEEKKAKGFVDWSKDHEGSLFHYSSGMQAVMLAVGICEKVSVFGFGKLNST 348

Query: 343 KHHYHSNQKAELDLHDYKAEYAFYRDLADRPEVVPFLNDAGIAVPPVVFYH 393
           KHHYH+NQKAEL LHDY+AEY  YRDL + P  +PFL      +P V  YH
Sbjct: 349 KHHYHTNQKAELKLHDYEAEYRLYRDLENSPRAIPFLPKE-FKIPLVQVYH 398



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,189,632
Number of extensions: 213571
Number of successful extensions: 562
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,337,553
Effective search space: 2434565476
Effective search space used: 2434565476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 113 (48.1 bits)