BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0858700 Os01g0858700|AK119765
         (403 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27590.1  | chr2:11777768-11779777 REVERSE LENGTH=373          426   e-119

>AT2G27590.1 | chr2:11777768-11779777 REVERSE LENGTH=373
          Length = 372

 Score =  426 bits (1094), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/324 (60%), Positives = 253/324 (78%), Gaps = 14/324 (4%)

Query: 82  MPSKFHLYQLSVQSPKGDISYLQKFFLMYVGGRVPLHFQEDFCGTALLSAEWLRTDARRT 141
           +PSKF LYQ SVQSPKGDISYLQKFFLMYVGGR P HFQEDFCGTALLSAEWL+TD RRT
Sbjct: 58  LPSKFLLYQQSVQSPKGDISYLQKFFLMYVGGRQPFHFQEDFCGTALLSAEWLKTDTRRT 117

Query: 142 AVGLDLDLESLEWCLENNLSKIGADGYSRMLLFHGNVLQPNVARLVKQKICDAMQDLHVN 201
           A+GLD DLE+LEWC++NN+SK+G+D YSRM LFHGNVL P  A+ VK K  + +Q++ ++
Sbjct: 118 AIGLDFDLEALEWCMDNNISKLGSDVYSRMSLFHGNVLTPLEAKQVKSKSHELIQNISLD 177

Query: 202 --NDNDSLAS-NICDQLDPASPKCSANSTMSDLVLPARDIICAFNYSCCCLHRRKDLVLY 258
             +DN+ LA  ++ + L+   P            LP RDI+CAFN+SCCCLH+R +LV Y
Sbjct: 178 DGDDNEDLADPSVVESLEKDGPDS----------LPKRDIVCAFNFSCCCLHKRSELVSY 227

Query: 259 FRHAFNALSKRGGIFVMDVYGGTSSERKLRLQRRFPSFTYFWEQEEFDIISHQTRISLHF 318
           F++A +ALSK+GGIFVMD+YGG S+E +L+LQR+FP+FTY WEQ EFDI+S +TRISLH+
Sbjct: 228 FKNARDALSKKGGIFVMDLYGGASAEGQLKLQRKFPNFTYTWEQAEFDILSRKTRISLHY 287

Query: 319 QAGKK-QMLRHAFTYHWRLWSIPEIKDCLEEAGFKSIHVWIREMPNTQSSGNAKEYNANR 377
              K+ + +RHAF+Y WRLWS+PEIKDC+EEAGF S+H W+REMP+         + A R
Sbjct: 288 HLQKQNRKIRHAFSYSWRLWSLPEIKDCMEEAGFSSVHFWLREMPDASEMRRTDGFGAGR 347

Query: 378 DVKYEELQHFNQADAWNAYVVGVA 401
           D+KYE+++ F Q D+WNAY+V V+
Sbjct: 348 DIKYEQVKSFQQCDSWNAYIVAVS 371



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,310,756
Number of extensions: 336536
Number of successful extensions: 710
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,337,553
Effective search space: 2517941006
Effective search space used: 2517941006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)