BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0852500 Os01g0852500|AK069637
(403 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11400.1 | chr4:6938717-6940539 FORWARD LENGTH=574 120 1e-27
AT5G04110.1 | chr5:1110757-1114112 REVERSE LENGTH=547 120 2e-27
AT2G46040.1 | chr2:18935684-18937807 REVERSE LENGTH=563 99 5e-21
AT2G03470.1 | chr2:1045694-1047130 REVERSE LENGTH=451 79 4e-15
AT1G26580.1 | chr1:9185620-9187213 FORWARD LENGTH=494 73 3e-13
AT1G13880.1 | chr1:4749603-4750967 FORWARD LENGTH=425 68 1e-11
>AT4G11400.1 | chr4:6938717-6940539 FORWARD LENGTH=574
Length = 573
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 94/174 (54%), Gaps = 20/174 (11%)
Query: 195 RKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKMLGTRIWPPEG-----QVLQTDKK 249
R+ I VG QA+V +WTE D + SK LGTRIWPPE Q L D
Sbjct: 371 RRCIKVGHQHQAQVDEWTESGVD---------SDSKWLGTRIWPPENSEALDQTLGND-- 419
Query: 250 IAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEEVSKMWTREE 309
+ G+GR +SC+C G C + H R +L+ ELG F WRF+ MGEEV WT EE
Sbjct: 420 LVGKGRPDSCSCELSGFVECTRLHIAEKRMELKRELGDDFFHWRFNQMGEEVCLRWTEEE 479
Query: 310 QLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQCRL 363
+ +F + + D ++FW A+K+ K R ELV YY NVFL+ R Q R+
Sbjct: 480 EKRFKDM----IIADPQSFWTNAAKNFPKKKREELVSYYFNVFLINRRRYQNRV 529
>AT5G04110.1 | chr5:1110757-1114112 REVERSE LENGTH=547
Length = 546
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 89/165 (53%), Gaps = 2/165 (1%)
Query: 195 RKKIGVGEHFQAEVPDWTEPPS-DELARYKNDPNISKMLGTRIWPPEGQVLQTDKKIAGQ 253
R I +G FQAE+P W P + D N + LGT +WP K G+
Sbjct: 358 RPAIPIGPRFQAEIPVWIAPTKKGKFYGSPGDSNTLRWLGTGVWPTYSLKKTVHSKKVGE 417
Query: 254 GRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEEVS-KMWTREEQLK 312
GR +SC+C+ P S C + H A++ L E+ RAF+ W FD MGEE+ K WT +E+ +
Sbjct: 418 GRSDSCSCASPRSTNCIKRHKKEAQELLEKEINRAFSTWEFDQMGEEIVLKSWTAKEERR 477
Query: 313 FNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRV 357
F AL + P+ FW AS K++ +L+ YY NVFL++R+
Sbjct: 478 FEALVKKNPLSSSDGFWEFASNAFPQKSKKDLLSYYYNVFLIKRM 522
>AT2G46040.1 | chr2:18935684-18937807 REVERSE LENGTH=563
Length = 562
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 88/175 (50%), Gaps = 18/175 (10%)
Query: 200 VGEHFQAEVPDWT--EPPSDELARYKNDPNISKMLGTRIWPPEGQVLQTDKKI----AGQ 253
VG FQA+VP+WT P SD SK LGTRIWP + + + I G+
Sbjct: 362 VGSKFQAKVPEWTGITPESD-----------SKWLGTRIWPLTKEQTKANLLIERDRIGK 410
Query: 254 GRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRAFTEWRFDSMGEEVSKMWTREEQLKF 313
GR + C C PGS C + H A RD+L+ ELG AF W FD MGE + WT + +LK
Sbjct: 411 GRQDPCGCHNPGSIECVKFHITAKRDKLKLELGPAFYMWCFDVMGECTLQYWT-DLELKK 469
Query: 314 NALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQCRLNLLEI 368
P F A L SK+R ++V Y+ NV L++ SQ R+ +I
Sbjct: 470 IKSLMSSPPSLSPAFIHQAKMILPSKSRGKIVSYFYNVTLLQYRASQSRITPHDI 524
>AT2G03470.1 | chr2:1045694-1047130 REVERSE LENGTH=451
Length = 450
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 11/192 (5%)
Query: 182 KRMKLMTSVLLTQ--RKKIGVGEHFQAEVPDWT--EPPSDELARYKNDPNISKMLGTRIW 237
K ++ + + L+ Q RK++ VG + QA++P++ E AR K D K++ +
Sbjct: 105 KPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLE-GKLMRKCVI 163
Query: 238 PPEGQVLQTDKKIAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELG-RAFTEWRFDS 296
P + +D GQGR E C C GS C + H AR+ L +G F E
Sbjct: 164 P----MSDSDLCGTGQGRKE-CLCLDKGSIRCVRRHIIEARESLVETIGYERFMELGLCE 218
Query: 297 MGEEVSKMWTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRR 356
MGEEV+ +WT EE+ F+ + P + FW S+T ELV YY NVF++RR
Sbjct: 219 MGEEVASLWTEEEEDLFHKVVYSNPFSAGRDFWKQLKGTFPSRTMKELVSYYFNVFILRR 278
Query: 357 VLSQCRLNLLEI 368
Q R L++
Sbjct: 279 RGIQNRFKALDV 290
>AT1G26580.1 | chr1:9185620-9187213 FORWARD LENGTH=494
Length = 493
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 15/203 (7%)
Query: 179 RLAKRMKLMTSVLLTQR--KKIGVGEHFQAEVPDW--TEPPSDELARYKNDPNIS----- 229
R+ ++ +LL QR K++ +G QAE+P+W ++ + E + +IS
Sbjct: 114 RVFAPVETFYYLLLDQRAKKQVPIGPGHQAEIPEWEGSQTGNIETSGMSVQNHISGCADG 173
Query: 230 -KMLGTRIWPPEG--QVLQTDKKIAGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELG 286
K+ GT + P G V D I G+GR + C C S C H AR++L G
Sbjct: 174 EKLFGTSVIPMPGLTTVAHIDD-IVGKGR-KFCVCRDRDSVRCVCQHIKEAREELVKTFG 231
Query: 287 R-AFTEWRFDSMGEEVSKMWTREEQLKFNALERLVPVMDHKTFWAVASKHLASKTRIELV 345
F E MGE+ + W+ E+ F+ + PV + FW S+T+ E+V
Sbjct: 232 NETFKELGLCEMGEKGALKWSDEDAQLFHEVVYSNPVTLGQNFWRHLEAAFCSRTQKEIV 291
Query: 346 RYYLNVFLMRRVLSQCRLNLLEI 368
+Y NVF++RR Q R +L+I
Sbjct: 292 SFYFNVFVLRRRAIQNRAFILDI 314
>AT1G13880.1 | chr1:4749603-4750967 FORWARD LENGTH=425
Length = 424
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 6/179 (3%)
Query: 192 LTQRKKIGVGEHFQAEVPDWTEPPSDELARYKNDPNISKMLGTRIWP-PEGQVLQTDKKI 250
++ RK + +G +QA++P+ + +++ + + ++ G + P P+ +T+
Sbjct: 122 ISPRKTVPIGSDYQADIPECVKEEANDQSGQGVGYDEEQVTGKCVIPMPD---CETEVCK 178
Query: 251 AGQGRMESCNCSYPGSFFCRQHHTDAARDQLRCELGRA-FTEWRFDSMGEEVSKMWTREE 309
G+GR E C C GS C Q H R+ L +G + MGEEV+ T +E
Sbjct: 179 IGKGRKE-CICLDKGSIRCVQQHIMENREDLFATIGYDRCLDIGLCEMGEEVAARLTEDE 237
Query: 310 QLKFNALERLVPVMDHKTFWAVASKHLASKTRIELVRYYLNVFLMRRVLSQCRLNLLEI 368
+ F+ + PV + FW S+T E+V YY NVF++RR Q R L++
Sbjct: 238 EDLFHEIVYSNPVSMDRDFWKHLKSAFPSRTMKEIVSYYFNVFILRRRAIQNRSKSLDV 296
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,611,204
Number of extensions: 237675
Number of successful extensions: 575
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 563
Number of HSP's successfully gapped: 6
Length of query: 403
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,337,553
Effective search space: 2517941006
Effective search space used: 2517941006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)